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Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

Nature reviews. Microbiology, 2014-09, Vol.12 (9), p.647-653

2014

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Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

Current opinion in microbiology, 2010-12, Vol.13 (6), p.773-780

2010

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Xenogeneic silencing strategies in bacteria are dictated by RNA polymerase promiscuity

Nature communications, 2022-03, Vol.13 (1), p.1149-1149, Article 1149

2022

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The multiple antibiotic resistance operon of enteric bacteria controls DNA repair and outer membrane integrity

Nature communications, 2017-11, Vol.8 (1), p.1444-12, Article 1444

2017

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H-NS is a bacterial transposon capture protein

Nature communications, 2024-08, Vol.15 (1), p.7137-15

2024

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Widespread suppression of intragenic transcription initiation by H-NS

Genes & development, 2014-02, Vol.28 (3), p.214-219

2014

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The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of proVWX in E. coli

Nature communications, 2023-11, Vol.14 (1), p.7478-7478, Article 7478

2023

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Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria

PLoS genetics, 2011-06, Vol.7 (6), p.e1002123-e1002123

2011

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Mapping direct and indirect MarA/SoxS/Rob/RamA regulons in Salmonella Typhimurium reveals repression of csgD and biofilm formation

Microbiology (Society for General Microbiology), 2023-05, Vol.169 (5)

2023

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An unexpected abundance of bidirectional promoters within Salmonella Typhimurium plasmids

Microbiology (Society for General Microbiology), 2023-05, Vol.169 (5)

2023

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The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae

PLoS genetics, 2019-10, Vol.15 (10), p.e1008362-e1008362

2019

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Structure and function of bacterial H-NS protein

Biochemical Society transactions, 2016-12, Vol.44 (6), p.1561-1569

Grainger, David C

2016

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The molecular basis for control of ETEC enterotoxin expression in response to environment and host

PLoS pathogens, 2015-01, Vol.11 (1), p.e1004605-e1004605

2015

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Unusually Situated Binding Sites for Bacterial Transcription Factors Can Have Hidden Functionality

PloS one, 2016-06, Vol.11 (6), p.e0157016-e0157016

2016

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cAMP Receptor Protein Controls Vibrio cholerae Gene Expression in Response to Host Colonization

mBio, 2018-07, Vol.9 (4)

2018

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Spurious transcription and its impact on cell function

Transcription, 2018-01, Vol.9 (3), p.182-189

2018

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H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions

PLoS genetics, 2013-06, Vol.9 (6), p.e1003589-e1003589

2013

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A simple mechanism for integration of quorum sensing and cAMP signalling in Vibrio cholerae

eLife, 2023-07, Vol.12

2023

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Studies of the Distribution of Escherichia coli cAMP-Receptor Protein and RNA Polymerase along the E. coli Chromosome

Proceedings of the National Academy of Sciences - PNAS, 2005-12, Vol.102 (49), p.17693-17698

2005

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The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

Nucleic acids research, 2008-07, Vol.36 (12), p.3950-3955

2008

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Homologs of the Escherichia coli F Element Protein TraR, Including Phage Lambda Orf73, Directly Reprogram Host Transcription

mBio, 2022-05, Vol.13 (3), p.e0095222

2022

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Chromosome organization in bacteria: mechanistic insights into genome structure and function

Nature reviews. Genetics, 2020-04, Vol.21 (4), p.227-242

2020

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Selective repression by Fis and H-NS at the Escherichia coli dps promoter

Molecular microbiology, 2008-06, Vol.68 (6), p.1366-1377

2008

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E. coli Fis protein insulates the cbpA gene from uncontrolled transcription

PLoS genetics, 2013-01, Vol.9 (1), p.e1003152-e1003152

2013

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The Escherichia coli Nucleoid in Stationary Phase

Advances in Applied Microbiology, 2013, Vol.83, p.69-86

2013

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Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

Xenogeneic silencing strategies in bacteria are dictated by RNA polymerase promiscuity

The multiple antibiotic resistance operon of enteric bacteria controls DNA repair and outer membrane integrity

H-NS is a bacterial transposon capture protein

Widespread suppression of intragenic transcription initiation by H-NS

The environmentally-regulated interplay between local three-dimensional chromatin organisation and transcription of proVWX in E. coli

Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria

Mapping direct and indirect MarA/SoxS/Rob/RamA regulons in Salmonella Typhimurium reveals repression of csgD and biofilm formation

An unexpected abundance of bidirectional promoters within Salmonella Typhimurium plasmids

The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae

Structure and function of bacterial H-NS protein

The molecular basis for control of ETEC enterotoxin expression in response to environment and host

Unusually Situated Binding Sites for Bacterial Transcription Factors Can Have Hidden Functionality

cAMP Receptor Protein Controls Vibrio cholerae Gene Expression in Response to Host Colonization

Spurious transcription and its impact on cell function

H-NS can facilitate specific DNA-binding by RNA polymerase in AT-rich gene regulatory regions

A simple mechanism for integration of quorum sensing and cAMP signalling in Vibrio cholerae

Studies of the Distribution of Escherichia coli cAMP-Receptor Protein and RNA Polymerase along the E. coli Chromosome

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

Homologs of the Escherichia coli F Element Protein TraR, Including Phage Lambda Orf73, Directly Reprogram Host Transcription

Chromosome organization in bacteria: mechanistic insights into genome structure and function

Selective repression by Fis and H-NS at the Escherichia coli dps promoter

E. coli Fis protein insulates the cbpA gene from uncontrolled transcription

The Escherichia coli Nucleoid in Stationary Phase

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