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Signals for pre-mRNA cleavage and polyadenylation

Wiley interdisciplinary reviews. RNA, 2012-05, Vol.3 (3), p.385-396

2012

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Macrophage differentiation is marked by increased abundance of the mRNA 3' end processing machinery, altered poly(A) site usage, and sensitivity to the level of CstF64

Frontiers in immunology, 2023-01, Vol.14, p.1091403

2023

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A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud

Briefings in bioinformatics, 2024-05, Vol.25 (4)

2024

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Gene-specific RNA polymerase II phosphorylation and the CTD code

Nature structural & molecular biology, 2010-10, Vol.17 (10), p.1279-1286

2010

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Transcriptomic analysis reveals regulation of adipogenesis via long non-coding RNA, alternative splicing, and alternative polyadenylation

Scientific reports, 2024-07, Vol.14 (1), p.16964-19, Article 16964

2024

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Differential effects of RASA3 mutations on hematopoiesis are profoundly influenced by genetic background and molecular variant

PLoS genetics, 2020-12, Vol.16 (12), p.e1008857-e1008857

2020

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Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development

Scientific reports, 2023-07, Vol.13 (1), p.12239-13, Article 12239

2023

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A customized and versatile high-density genotyping array for the mouse

Nature methods, 2009-09, Vol.6 (9), p.663-666

2009

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S100A4 Is a Biomarker and Regulator of Glioma Stem Cells That Is Critical for Mesenchymal Transition in Glioblastoma

Cancer research (Chicago, Ill.), 2017-10, Vol.77 (19), p.5360-5373

2017

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Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes

Cancer research (Chicago, Ill.), 2009-12, Vol.69 (24), p.9422-9430

2009

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An expanded mouse testis transcriptome and mass spectrometry defines novel proteins

Reproduction (Cambridge, England), 2020-01, Vol.159 (1), p.15-26

2020

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Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples

Genetics (Austin), 2019-07, Vol.212 (3), p.919-929

2019

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Mutations in yeast Pcf11, a conserved protein essential for mRNA 3' end processing and transcription termination, elicit the Environmental Stress Response

Genetics (Austin), 2024-02, Vol.226 (2)

2024

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Position-dependent motif characterization using non-negative matrix factorization

Bioinformatics, 2008-12, Vol.24 (23), p.2684-2690

2008

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The recombinational anatomy of a mouse chromosome

PLoS genetics, 2008-07, Vol.4 (7), p.e1000119-e1000119

2008

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GLH-1/Vasa represses neuropeptide expression and drives spermiogenesis in the C. elegans germline

Developmental biology, 2022-12, Vol.492, p.200-211

2022

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Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity

Scientific reports, 2020-07, Vol.10 (1), p.11415, Article 11415

2020

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Retrotransposons Regulate Host Genes in Mouse Oocytes and Preimplantation Embryos

Developmental cell, 2004-10, Vol.7 (4), p.597-606

2004

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Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

BMC medical genomics, 2019-07, Vol.12 (1), p.92-19, Article 92

2019

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Ipa1 Is an RNA Polymerase II Elongation Factor that Facilitates Termination by Maintaining Levels of the Poly(A) Site Endonuclease Ysh1

Cell reports (Cambridge), 2019-02, Vol.26 (7), p.1919-1933.e5

2019

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Ipa1 Is an RNA Polymerase II Elongation Factor that Facilitates Termination by Maintaining Levels of the Poly(A) Site Endonuclease Ysh1

Cell reports (Cambridge), 2020-08, Vol.32 (5), p.108031-108031, Article 108031

2020

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Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability

Nucleic acids research, 2017-02, Vol.45 (3), p.1130-1143

2017

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TauCstF-64 Mediates Correct mRNA Polyadenylation and Splicing of Activator and Repressor Isoforms of the Cyclic AMP-Responsive Element Modulator (CREM) in Mouse Testis

Biology of reproduction, 2016-02, Vol.94 (2), p.34-34

2016

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RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations

Genetics (Austin), 2014-09, Vol.198 (1), p.59-73

2014

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Signals for pre-mRNA cleavage and polyadenylation

Macrophage differentiation is marked by increased abundance of the mRNA 3' end processing machinery, altered poly(A) site usage, and sensitivity to the level of CstF64

A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud

Gene-specific RNA polymerase II phosphorylation and the CTD code

Transcriptomic analysis reveals regulation of adipogenesis via long non-coding RNA, alternative splicing, and alternative polyadenylation

Differential effects of RASA3 mutations on hematopoiesis are profoundly influenced by genetic background and molecular variant

Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development

A customized and versatile high-density genotyping array for the mouse

S100A4 Is a Biomarker and Regulator of Glioma Stem Cells That Is Critical for Mesenchymal Transition in Glioblastoma

Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes

An expanded mouse testis transcriptome and mass spectrometry defines novel proteins

Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples

Mutations in yeast Pcf11, a conserved protein essential for mRNA 3' end processing and transcription termination, elicit the Environmental Stress Response

Position-dependent motif characterization using non-negative matrix factorization

The recombinational anatomy of a mouse chromosome

GLH-1/Vasa represses neuropeptide expression and drives spermiogenesis in the C. elegans germline

Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity

Retrotransposons Regulate Host Genes in Mouse Oocytes and Preimplantation Embryos

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

Ipa1 Is an RNA Polymerase II Elongation Factor that Facilitates Termination by Maintaining Levels of the Poly(A) Site Endonuclease Ysh1

Ipa1 Is an RNA Polymerase II Elongation Factor that Facilitates Termination by Maintaining Levels of the Poly(A) Site Endonuclease Ysh1

Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability

TauCstF-64 Mediates Correct mRNA Polyadenylation and Splicing of Activator and Repressor Isoforms of the Cyclic AMP-Responsive Element Modulator (CREM) in Mouse Testis

A Genomically and Clinically Annotated Patient-Derived Xenograft Resource for Preclinical Research in Non-Small Cell Lung Cancer

RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations

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