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Tissue-specific atlas of trans-models for gene regulation elucidates complex regulation patterns

BMC genomics, 2024-04, Vol.25 (1), p.377-377, Article 377

2024

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Explainable drug sensitivity prediction through cancer pathway enrichment

Scientific reports, 2021-02, Vol.11 (1), p.3128-3128, Article 3128

2021

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Reconstruction of the Mouse Otocyst and Early Neuroblast Lineage at Single-Cell Resolution

Cell, 2014-05, Vol.157 (4), p.964-978

2014

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Molecular pathways enhance drug response prediction using transfer learning from cell lines to tumors and patient-derived xenografts

Scientific reports, 2022-09, Vol.12 (1), p.16109-16109, Article 16109

2022

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Combining drug and gene similarity measures for drug-target elucidation

Journal of computational biology, 2011-02, Vol.18 (2), p.133

2011

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Tissue-Specific Variations in Transcription Factors Elucidate Complex Immune System Regulation

Genes, 2022-05, Vol.13 (5), p.929

2022

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Brain Antigens Stimulate Proliferation of T Lymphocytes With a Pathogenic Phenotype in Multiple Sclerosis Patients

Frontiers in immunology, 2022-01, Vol.13, p.835763-835763

2022

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Prediction of Mild Cognitive Impairment Status: Pilot Study of Machine Learning Models Based on Longitudinal Data From Fitness Trackers

JMIR formative research, 2024-07, Vol.8, p.e55575

2024

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Time dependent analysis of rat microglial surface markers in traumatic brain injury reveals dynamics of distinct cell subpopulations

Scientific reports, 2022-04, Vol.12 (1), p.6289-6289, Article 6289

2022

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Environmental stresses disrupt telomere length homeostasis

PLoS genetics, 2013-09, Vol.9 (9), p.e1003721

2013

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A Method for Bridging Population-Specific Genotypes to Detect Gene Modules Associated with Alzheimer's Disease

Cells (Basel, Switzerland), 2022-07, Vol.11 (14), p.2219

2022

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Novel Unsupervised Feature Filtering of Biological Data

Bioinformatics, 2006-07, Vol.22 (14), p.e507-e513

2006

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Sociodemographic and Clinical Characteristics Associated with Improvements in Quality of Life for Participants with Opioid Use Disorder

Healthcare (Basel), 2022-01, Vol.10 (1), p.167

2022

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A Phenotyping Algorithm to Identify People With HIV in Electronic Health Record Data (HIV-Phen): Development and Evaluation Study

JMIR formative research, 2021-11, Vol.5 (11), p.e28620-e28620

2021

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SynPathy: Predicting Drug Synergy through Drug-Associated Pathways Using Deep Learning

Molecular cancer research, 2022-05, Vol.20 (5), p.762-769

2022

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Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging

Communications biology, 2024-04, Vol.7 (1), p.414-414, Article 414

2024

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Machine Learning for Predicting Risk of Early Dropout in a Recovery Program for Opioid Use Disorder

Healthcare (Basel), 2022-01, Vol.10 (2), p.223

2022

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Cohort-specific imputation of gene expression improves prediction of warfarin dose for African Americans

Genome medicine, 2017-11, Vol.9 (1), p.98-98, Article 98

2017

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Common peptides study of aminoacyl-tRNA synthetases

PloS one, 2011-05, Vol.6 (5), p.e20361-e20361

2011

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Unsupervised feature selection under perturbations: meeting the challenges of biological data

Bioinformatics, 2007-12, Vol.23 (24), p.3343-3349

2007

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PREDICT: a method for inferring novel drug indications with application to personalized medicine

Molecular systems biology, 2011-06, Vol.7 (1), p.496-n/a

2011

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UFFizi: a generic platform for ranking informative features

BMC bioinformatics, 2010-06, Vol.11 (1), p.300-300, Article 300

2010

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INDI: a computational framework for inferring drug interactions and their associated recommendations

Molecular systems biology, 2012-07, Vol.8 (1), p.592-n/a

2012

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Common peptides shed light on evolution of Olfactory Receptors

BMC evolutionary biology, 2009-05, Vol.9, p.91

2009

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Generalizable pipeline for constructing HIV risk prediction models across electronic health record systems

Journal of the American Medical Informatics Association : JAMIA, 2024-02, Vol.31 (3), p.666-673

2024

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Tissue-specific atlas of trans-models for gene regulation elucidates complex regulation patterns

Explainable drug sensitivity prediction through cancer pathway enrichment

Reconstruction of the Mouse Otocyst and Early Neuroblast Lineage at Single-Cell Resolution

Molecular pathways enhance drug response prediction using transfer learning from cell lines to tumors and patient-derived xenografts

Combining drug and gene similarity measures for drug-target elucidation

Tissue-Specific Variations in Transcription Factors Elucidate Complex Immune System Regulation

Brain Antigens Stimulate Proliferation of T Lymphocytes With a Pathogenic Phenotype in Multiple Sclerosis Patients

Prediction of Mild Cognitive Impairment Status: Pilot Study of Machine Learning Models Based on Longitudinal Data From Fitness Trackers

Time dependent analysis of rat microglial surface markers in traumatic brain injury reveals dynamics of distinct cell subpopulations

Environmental stresses disrupt telomere length homeostasis

A Method for Bridging Population-Specific Genotypes to Detect Gene Modules Associated with Alzheimer's Disease

Novel Unsupervised Feature Filtering of Biological Data

Sociodemographic and Clinical Characteristics Associated with Improvements in Quality of Life for Participants with Opioid Use Disorder

A Phenotyping Algorithm to Identify People With HIV in Electronic Health Record Data (HIV-Phen): Development and Evaluation Study

SynPathy: Predicting Drug Synergy through Drug-Associated Pathways Using Deep Learning

Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging

Machine Learning for Predicting Risk of Early Dropout in a Recovery Program for Opioid Use Disorder

Cohort-specific imputation of gene expression improves prediction of warfarin dose for African Americans

Common peptides study of aminoacyl-tRNA synthetases

Unsupervised feature selection under perturbations: meeting the challenges of biological data

PREDICT: a method for inferring novel drug indications with application to personalized medicine

UFFizi: a generic platform for ranking informative features

INDI: a computational framework for inferring drug interactions and their associated recommendations

Common peptides shed light on evolution of Olfactory Receptors

Generalizable pipeline for constructing HIV risk prediction models across electronic health record systems

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