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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

PloS one, 2015-07, Vol.10 (7), p.e0132628-e0132628

2015

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Regeneration in plants and animals: dedifferentiation, transdifferentiation, or just differentiation?

Trends in cell biology, 2011-04, Vol.21 (4), p.212-218

2011

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

Nature communications, 2017-12, Vol.8 (1), p.2184-13, Article 2184

2017

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Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

Proceedings of the National Academy of Sciences - PNAS, 2009-09, Vol.106 (38), p.16529-16534

2009

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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes

The New phytologist, 2018-06, Vol.218 (4), p.1631-1644

2018

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Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem

Proceedings of the National Academy of Sciences - PNAS, 2012-03, Vol.109 (10), p.4002-4007

2012

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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

BMC genomics, 2019-07, Vol.20 (1), p.580-580, Article 580

2019

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Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

PloS one, 2012-09, Vol.7 (9), p.e41916

2012

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Pattern formation during de novo assembly of the Arabidopsis shoot meristem

Development (Cambridge), 2007-10, Vol.134 (19), p.3539-3548

2007

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Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei

PloS one, 2016-12, Vol.11 (12), p.e0167171-e0167171

2016

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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines

The Plant journal : for cell and molecular biology, 2014-08, Vol.79 (3), p.361-374

2014

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Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

Frontiers in plant science, 2021-04, Vol.12, p.657796-657796

2021

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Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Nature communications, 2020-07, Vol.11 (1), p.3670-3670, Article 3670

2020

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Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon

Genome biology and evolution, 2018-01, Vol.10 (1), p.304-318

2018

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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

The Plant journal : for cell and molecular biology, 2018-10, Vol.96 (2), p.438-451

2018

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Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon

Plant physiology (Bethesda), 2017-01, Vol.173 (1), p.269-279

2017

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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection

The Plant journal : for cell and molecular biology, 2017-08, Vol.91 (3), p.361-370

2017

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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

Frontiers in plant science, 2017-02, Vol.8, p.184-184

2017

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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

Genetics (Austin), 2019-01, Vol.211 (1), p.317-331

2019

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RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding

Cellular and molecular life sciences : CMLS, 2019-06, Vol.76 (12), p.2425-2447

2019

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The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum

G3 : genes - genomes - genetics, 2023-12, Vol.14 (1)

2023

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Unravelling developmental dynamics: transient intervention and live imaging in plants

Nature reviews. Molecular cell biology, 2007-06, Vol.8 (6), p.491-501

2007

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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

BMC genomics, 2019-07, Vol.20 (1)

2019

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Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

The Plant journal : for cell and molecular biology, 2018-09, Vol.96 (2)

2018

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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

Regeneration in plants and animals: dedifferentiation, transdifferentiation, or just differentiation?

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes

Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem

PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

Pattern formation during de novo assembly of the Arabidopsis shoot meristem

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon

Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon

Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate

RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding

The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

Unravelling developmental dynamics: transient intervention and live imaging in plants

PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

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