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The Goodwin Oscillator and its Legacy

Acta biotheoretica, 2021-12, Vol.69 (4), p.857-874

2021

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Modeling the effect of cell division on genetic oscillators

Journal of theoretical biology, 2013-05, Vol.325, p.22-33

Gonze, Didier

2013

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Multi-stability and the origin of microbial community types

The ISME Journal, 2017-10, Vol.11 (10), p.2159-2166

2017

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Stochastic simulation of a model for circadian rhythms in plants

Journal of theoretical biology, 2021-10, Vol.527, p.110790-110790, Article 110790

2021

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Mutualistic cross-feeding in microbial systems generates bistability via an Allee effect

Scientific reports, 2020-05, Vol.10 (1), p.7763-7763, Article 7763

2020

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The Goodwin model: behind the Hill function

PloS one, 2013-08, Vol.8 (8), p.e69573-e69573

2013

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Modeling circadian clocks: From equations to oscillations

Central European journal of biology, 2011-10, Vol.6 (5)

Gonze, Didier

2011

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Gata6, Nanog and Erk signaling control cell fate in the inner cell mass through a tristable regulatory network

Development (Cambridge), 2014-10, Vol.141 (19), p.3637-3648

2014

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Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

eLife, 2018-10, Vol.7

2018

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Quantifying the impact of ecological memory on the dynamics of interacting communities

PLoS computational biology, 2022-06, Vol.18 (6), p.e1009396-e1009396

2022

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Circadian Misalignment and Metabolic Disorders: A Story of Twisted Clocks

Biology (Basel, Switzerland), 2021-03, Vol.10 (3), p.207

2021

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Cell Fate Specification Based on Tristability in the Inner Cell Mass of Mouse Blastocysts

Biophysical journal, 2016-02, Vol.110 (3), p.710-722

2016

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Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations

PloS one, 2018-06, Vol.13 (6), p.e0197462-e0197462

2018

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Modeling the Circadian Control of the Cell Cycle and Its Consequences for Cancer Chronotherapy

Biology (Basel, Switzerland), 2023-04, Vol.12 (4), p.612

2023

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Application of comparative genomics of Acetobacter species facilitates genome-scale metabolic reconstruction of the Acetobacter ghanensis LMG 23848T and Acetobacter senegalensis 108B cocoa strains

Frontiers in microbiology, 2022-11, Vol.13, p.1060160-1060160

2022

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Spontaneous Synchronization of Coupled Circadian Oscillators

Biophysical journal, 2005-07, Vol.89 (1), p.120-129

2005

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Effect of network architecture on synchronization and entrainment properties of the circadian oscillations in the suprachiasmatic nucleus

PLoS computational biology, 2012-03, Vol.8 (3), p.e1002419-e1002419

2012

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A Computational Model for the Cold Response Pathway in Plants

Frontiers in physiology, 2020-11, Vol.11, p.591073-591073

2020

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Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics

PLoS computational biology, 2019-09, Vol.15 (9), p.e1007330-e1007330

2019

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Modeling the Dynamics of Let-7-Coupled Gene Regulatory Networks Linking Cell Proliferation to Malignant Transformation

Frontiers in physiology, 2019-07, Vol.10, p.848-848

2019

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Robustness of Circadian Rhythms with Respect to Molecular Noise

Proceedings of the National Academy of Sciences - PNAS, 2002-01, Vol.99 (2), p.673-678

2002

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Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation

Frontiers in microbiology, 2019-12, Vol.10, p.2801-2801

2019

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Sharp developmental thresholds defined through bistability by antagonistic gradients of retinoic acid and FGF signaling

Developmental dynamics, 2007-06, Vol.236 (6), p.1495-1508

2007

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Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus

PLoS computational biology, 2007-04, Vol.3 (4), p.e68-e68

2007

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Signatures of ecological processes in microbial community time series

Microbiome, 2018-06, Vol.6 (1), p.120-120, Article 120

2018

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The Goodwin Oscillator and its Legacy

Modeling the effect of cell division on genetic oscillators

Multi-stability and the origin of microbial community types

Stochastic simulation of a model for circadian rhythms in plants

Mutualistic cross-feeding in microbial systems generates bistability via an Allee effect

The Goodwin model: behind the Hill function

Modeling circadian clocks: From equations to oscillations

Gata6, Nanog and Erk signaling control cell fate in the inner cell mass through a tristable regulatory network

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

Quantifying the impact of ecological memory on the dynamics of interacting communities

Circadian Misalignment and Metabolic Disorders: A Story of Twisted Clocks

Cell Fate Specification Based on Tristability in the Inner Cell Mass of Mouse Blastocysts

Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations

Modeling the Circadian Control of the Cell Cycle and Its Consequences for Cancer Chronotherapy

Application of comparative genomics of Acetobacter species facilitates genome-scale metabolic reconstruction of the Acetobacter ghanensis LMG 23848T and Acetobacter senegalensis 108B cocoa strains

Spontaneous Synchronization of Coupled Circadian Oscillators

Effect of network architecture on synchronization and entrainment properties of the circadian oscillations in the suprachiasmatic nucleus

A Computational Model for the Cold Response Pathway in Plants

Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics

Modeling the Dynamics of Let-7-Coupled Gene Regulatory Networks Linking Cell Proliferation to Malignant Transformation

Robustness of Circadian Rhythms with Respect to Molecular Noise

Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation

Sharp developmental thresholds defined through bistability by antagonistic gradients of retinoic acid and FGF signaling

Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus

Signatures of ecological processes in microbial community time series

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