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Recombination in viruses: mechanisms, methods of study, and evolutionary consequences

Infection, genetics and evolution, 2015-03, Vol.30, p.296-307

2015

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SARS‐CoV‐2 RNA load in nasopharyngeal specimens from outpatients with breakthrough COVID‐19 due to Omicron BA.1 and BA.2

Journal of medical virology, 2022-12, Vol.94 (12), p.5836-5840

2022

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Genetic determinants of host tropism in Klebsiella phages

Cell reports (Cambridge), 2023-02, Vol.42 (2), p.112048, Article 112048

2023

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One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008678-e1008678

2021

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Assessing the potential association between SARS‐CoV‐2 RNA load in the respiratory tract and COVID‐19 mortality

Journal of medical virology, 2021-04, Vol.93 (4), p.1862-1864

2021

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Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

Journal of Virology, 2009-06, Vol.83 (11), p.5760-5764

2009

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Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission

The Journal of infectious diseases, 2014-01, Vol.209 (1), p.98-108

2014

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Isolation and Characterization of Two Klebsiella pneumoniae Phages Encoding Divergent Depolymerases

International journal of molecular sciences, 2020-04, Vol.21 (9), p.3160

2020

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Comprehensive Screening for Naturally Occurring Hepatitis C Virus Resistance to Direct-Acting Antivirals in the NS3, NS5A, and NS5B Genes in Worldwide Isolates of Viral Genotypes 1 to 6

Antimicrobial agents and chemotherapy, 2016-04, Vol.60 (4), p.2402-2416

2016

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Enterovirus co-infections and onychomadesis after hand, foot, and mouth disease, Spain, 2008

Emerging infectious diseases, 2011-12, Vol.17 (12), p.2223-2231

2011

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Domain Organization and Evolution of Multifunctional Autoprocessing Repeats-in-Toxin (MARTX) Toxin in Vibrio vulnificus

Applied and Environmental Microbiology, 2011-01, Vol.77 (2), p.657-668

2011

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Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme

PloS one, 2018-07, Vol.13 (7), p.e0200773

2018

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Listeria monocytogenes , a silent foodborne pathogen in Ecuador

Frontiers in microbiology, 2023-12, Vol.14, p.1278860-1278860

2023

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Isolation of Four Lytic Phages Infecting Klebsiella pneumoniae K22 Clinical Isolates from Spain

International journal of molecular sciences, 2020-01, Vol.21 (2), p.425

2020

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Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

Nature communications, 2019-09, Vol.10 (1), p.3994-3994, Article 3994

2019

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The population genetics and evolutionary epidemiology of RNA viruses

Nature reviews. Microbiology, 2004-04, Vol.2 (4), p.279-288

2004

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Evolutionary trajectories of beta-lactamase CTX-M-1 cluster enzymes: predicting antibiotic resistance

PLoS pathogens, 2010-01, Vol.6 (1), p.e1000735

2010

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Incidence and molecular epidemiology of hepatitis C virus reinfection in prisons in Catalonia, Spain (Re-HCV study)

Scientific reports, 2023-09, Vol.13 (1), p.16012-16012, Article 16012

2023

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Hepatitis C virus early kinetics and resistance‐associated substitution dynamics during antiviral therapy with direct‐acting antivirals

Journal of viral hepatitis, 2018-12, Vol.25 (12), p.1515-1525

2018

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Genotypic and phenotypic characterisation of a nosocomial outbreak of Candida auris in Spain during 5 years

Mycoses, 2024-08, Vol.67 (8), p.e13776-n/a

2024

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Inference of the Life Cycle of Environmental Phages from Genomic Signature Distances to Their Hosts

Viruses, 2023-05, Vol.15 (5), p.1196

2023

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Transmission of human immunodeficiency virus Type‐1 by fresh‐frozen plasma treated with methylene blue and light

Transfusion (Philadelphia, Pa.), 2016-04, Vol.56 (4), p.831-836

2016

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Polyphyletic Origin of Vibrio vulnificus Biotype 2 as Revealed by Sequence-Based Analysis

Applied and Environmental Microbiology, 2011-01, Vol.77 (2), p.688-695

2011

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Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source

BMC biology, 2013-07, Vol.11 (1), p.76-76, Article 76

2013

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An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

PLoS pathogens, 2018-10, Vol.14 (10), p.e1007368-e1007368

2018

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Recombination in viruses: mechanisms, methods of study, and evolutionary consequences

SARS‐CoV‐2 RNA load in nasopharyngeal specimens from outpatients with breakthrough COVID‐19 due to Omicron BA.1 and BA.2

Genetic determinants of host tropism in Klebsiella phages

One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads

Assessing the potential association between SARS‐CoV‐2 RNA load in the respiratory tract and COVID‐19 mortality

Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission

Isolation and Characterization of Two Klebsiella pneumoniae Phages Encoding Divergent Depolymerases

Comprehensive Screening for Naturally Occurring Hepatitis C Virus Resistance to Direct-Acting Antivirals in the NS3, NS5A, and NS5B Genes in Worldwide Isolates of Viral Genotypes 1 to 6

Enterovirus co-infections and onychomadesis after hand, foot, and mouth disease, Spain, 2008

Domain Organization and Evolution of Multifunctional Autoprocessing Repeats-in-Toxin (MARTX) Toxin in Vibrio vulnificus

Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme

Listeria monocytogenes , a silent foodborne pathogen in Ecuador

Isolation of Four Lytic Phages Infecting Klebsiella pneumoniae K22 Clinical Isolates from Spain

Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

The population genetics and evolutionary epidemiology of RNA viruses

Evolutionary trajectories of beta-lactamase CTX-M-1 cluster enzymes: predicting antibiotic resistance

Incidence and molecular epidemiology of hepatitis C virus reinfection in prisons in Catalonia, Spain (Re-HCV study)

Hepatitis C virus early kinetics and resistance‐associated substitution dynamics during antiviral therapy with direct‐acting antivirals

Genotypic and phenotypic characterisation of a nosocomial outbreak of Candida auris in Spain during 5 years

Inference of the Life Cycle of Environmental Phages from Genomic Signature Distances to Their Hosts

Transmission of human immunodeficiency virus Type‐1 by fresh‐frozen plasma treated with methylene blue and light

Polyphyletic Origin of Vibrio vulnificus Biotype 2 as Revealed by Sequence-Based Analysis

Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

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