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Predicting disease associations via biological network analysis

BMC bioinformatics, 2014-09, Vol.15 (1), p.304-304, Article 304

2014

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Candidate gene prioritization by network analysis of differential expression using machine learning approaches

BMC bioinformatics, 2010-09, Vol.11 (1), p.460-460, Article 460

2010

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Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency

Nature communications, 2019-04, Vol.10 (1), p.1598-14, Article 1598

2019

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PINTA: a web server for network-based gene prioritization from expression data

Nucleic acids research, 2011-07, Vol.39 (Web Server issue), p.W334-W338

2011

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Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores

PloS one, 2012-11, Vol.7 (11), p.e49634

2012

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BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data

BMC research notes, 2009-07, Vol.2 (1), p.124-124

2009

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Overcoming selection bias in synthetic lethality prediction

Bioinformatics, 2022-09, Vol.38 (18), p.4360-4368

2022

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ELISL: early-late integrated synthetic lethality prediction in cancer

Bioinformatics (Oxford, England), 2024-01, Vol.40 (1)

2024

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Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks

PloS one, 2012-05, Vol.7 (5), p.e35977-e35977

2012

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TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

Bioinformatics, 2011-11, Vol.27 (22), p.3149-3157

2011

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POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data

Journal of the Royal Society interface, 2009-10, Vol.6 (39), p.881

2009

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LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification

IEEE/ACM transactions on computational biology and bioinformatics, 2014-09, Vol.11 (5), p.801-813

2014

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AliBiMotif: integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences

International journal of data mining and bioinformatics, 2012, Vol.6 (2), p.196

2012

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P olar M apper : a computational tool for integrated visualization of protein interaction networks and mRNA expression data

Journal of the Royal Society interface, 2009-10, Vol.6 (39), p.881-896

2009

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Polar Mapper: a computational tool for integrated visualization of protein interaction networks and mRNA expression data

Nature precedings, 2008-12

2008

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Heuristic approaches for time-lagged biclustering

Proceedings of the 12th International Workshop on Data Mining in Bioinformatics, 2013, p.1-9

2013

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Going the extra (synaptic) mile: excitotoxicity as the road toward neurodegenerative diseases

Frontiers in cellular neuroscience, 2020-04, Vol.14, p.90

2020

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Designing ionic liquids: the chemical structure role in the toxicity

Ecotoxicology (London), 2013-01, Vol.22 (1), p.1-12

2013

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Unraveling the ecotoxicity of deep eutectic solvents using the mixture toxicity theory

Chemosphere (Oxford), 2018-12, Vol.212, p.890-897

2018

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Probable Person-to-Person Transmission of Legionnaires’ Disease

The New England journal of medicine, 2016-02, Vol.374 (5), p.497-498

2016

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The antagonist and synergist potential of cholinium-based deep eutectic solvents

Ecotoxicology and environmental safety, 2018-12, Vol.165, p.597-602

2018

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New insights on the effects of ionic liquid structural changes at the gene expression level: Molecular mechanisms of toxicity in Daphnia magna

Journal of hazardous materials, 2021-05, Vol.409, p.124517, Article 124517

2021

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Smartphone Use Side-by-Side with Burnout: Mediation of Work-Family Interaction and Loneliness

International journal of environmental research and public health, 2022-05, Vol.19 (11), p.6692

2022

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Ecotoxicity analysis of cholinium-based ionic liquids to Vibrio fischeri marine bacteria

Ecotoxicology and environmental safety, 2014-04, Vol.102, p.48-54

2014

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Zwitterionic compounds are less ecotoxic than their analogous ionic liquids

Green chemistry : an international journal and green chemistry resource : GC, 2021-05, Vol.23 (1), p.3683-3692

2021

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Predicting disease associations via biological network analysis

Candidate gene prioritization by network analysis of differential expression using machine learning approaches

Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency

PINTA: a web server for network-based gene prioritization from expression data

Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores

BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data

Overcoming selection bias in synthetic lethality prediction

ELISL: early-late integrated synthetic lethality prediction in cancer

Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data

LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification

AliBiMotif: integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences

P olar M apper : a computational tool for integrated visualization of protein interaction networks and mRNA expression data

Polar Mapper: a computational tool for integrated visualization of protein interaction networks and mRNA expression data

Heuristic approaches for time-lagged biclustering

Going the extra (synaptic) mile: excitotoxicity as the road toward neurodegenerative diseases

Designing ionic liquids: the chemical structure role in the toxicity

Unraveling the ecotoxicity of deep eutectic solvents using the mixture toxicity theory

Probable Person-to-Person Transmission of Legionnaires’ Disease

The antagonist and synergist potential of cholinium-based deep eutectic solvents

New insights on the effects of ionic liquid structural changes at the gene expression level: Molecular mechanisms of toxicity in Daphnia magna

Smartphone Use Side-by-Side with Burnout: Mediation of Work-Family Interaction and Loneliness

Ecotoxicity analysis of cholinium-based ionic liquids to Vibrio fischeri marine bacteria

Zwitterionic compounds are less ecotoxic than their analogous ionic liquids

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