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Reordering contigs of draft genomes using the Mauve Aligner

Bioinformatics, 2009-08, Vol.25 (16), p.2071-2073

2009

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Host range and molecular phylogenies of the soft rot enterobacterial genera Pectobacterium and Dickeya

Phytopathology, 2007-09, Vol.97 (9), p.1150-1163

2007

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Tailoring a Global Iron Regulon to a Uropathogen

mBio, 2020-03, Vol.11 (2)

2020

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Systematic Mutagenesis of the Escherichia coli Genome

Journal of Bacteriology, 2004-08, Vol.186 (15), p.4921-4930

2004

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Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria

BMC genomics, 2012-03, Vol.13 (1), p.110-110, Article 110

2012

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Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909)

PloS one, 2013-10, Vol.8 (10), p.e76567

2013

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Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli

Gene, 2003-06, Vol.311, p.153-163

2003

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Comparative Whole-Genome Hybridization Reveals Genomic Islands in Brucella Species

Journal of Bacteriology, 2004-08, Vol.186 (15), p.5040-5051

2004

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Regulation of Iron Transport in Streptococcus pneumoniae by RitR, an Orphan Response Regulator

Journal of Bacteriology, 2004-12, Vol.186 (23), p.8123-8136

2004

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Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation

BMC genomics, 2006-12, Vol.7 (1), p.305-305, Article 305

2006

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Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles

Genome research, 2003-11, Vol.13 (11), p.2435

2003

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Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

Microbiology and Molecular Biology Reviews, 2010-12, Vol.74 (4), p.479-503

2010

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Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens

BMC bioinformatics, 2009-06, Vol.10 (1), p.177-177, Article 177

2009

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Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains

BMC microbiology, 2009-02, Vol.9 Suppl 1 (S1), p.S4-S4, Article S4

2009

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Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

Nucleic acids research, 2006-01, Vol.34 (1), p.1

2006

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Genomic Interspecies Microarray Hybridization: Rapid Discovery of Three Thousand Genes in the Maize Endophyte,Klebsiella pneumoniae 342, by Microarray Hybridization with Escherichia coli K-12 Open Reading Frames

Applied and Environmental Microbiology, 2001-04, Vol.67 (4), p.1911-1921

2001

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Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets

Journal of Bacteriology, 2003-11, Vol.185 (21), p.6392-6399

2003

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Using Comparative Genomics for Inquiry-Based Learning to Dissect Virulence of Escherichia coli O157:H7 and Yersinia pestis

CBE life sciences education, 2012-03, Vol.11 (1), p.81-93

2012

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Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning

BMC genomics, 2014-06, Vol.15 (1), p.508-508

2014

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The evolution of metabolic networks of E. coli

BMC systems biology, 2011-11, Vol.5 (175), p.182-182

2011

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Modelling regulatory pathways in E. coli from time series expression profiles

Bioinformatics, 2002-07, Vol.18 Suppl 1 (1), p.S241-S248

2002

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Genome-wide expression profiling in Escherichia coli K-12

Nucleic acids research, 1999-10, Vol.27 (19), p.3821

1999

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The Complete Genome Sequence of Escherichia coli K-12

Science (American Association for the Advancement of Science), 1997-09, Vol.277 (5331), p.1453-1469

1997

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Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts

Environmental microbiology, 2010-06, Vol.12 (6), p.1604-1620

2010

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Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli

Genome biology, 2006-01, Vol.7 (5), p.R44-R44

2006

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Reordering contigs of draft genomes using the Mauve Aligner

Host range and molecular phylogenies of the soft rot enterobacterial genera Pectobacterium and Dickeya

Tailoring a Global Iron Regulon to a Uropathogen

Systematic Mutagenesis of the Escherichia coli Genome

Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria

Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909)

Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli

Comparative Whole-Genome Hybridization Reveals Genomic Islands in Brucella Species

Regulation of Iron Transport in Streptococcus pneumoniae by RitR, an Orphan Response Regulator

Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation

Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens

Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

Genomic Interspecies Microarray Hybridization: Rapid Discovery of Three Thousand Genes in the Maize Endophyte,Klebsiella pneumoniae 342, by Microarray Hybridization with Escherichia coli K-12 Open Reading Frames

Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets

Using Comparative Genomics for Inquiry-Based Learning to Dissect Virulence of Escherichia coli O157:H7 and Yersinia pestis

Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning

The evolution of metabolic networks of E. coli

Modelling regulatory pathways in E. coli from time series expression profiles

Genome-wide expression profiling in Escherichia coli K-12

The Complete Genome Sequence of Escherichia coli K-12

Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts

Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli

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