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AlphaSimR: an R package for breeding program simulations

G3 : genes - genomes - genetics, 2021-02, Vol.11 (2)

2021

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Novel combination of CRISPR-based gene drives eliminates resistance and localises spread

Scientific reports, 2021-03, Vol.11 (1), p.3719-3719, Article 3719

2021

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Genomic Selection for Processing and End‐Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program

The plant genome, 2016-07, Vol.9 (2), p.1-12

2016

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How Population Structure Impacts Genomic Selection Accuracy in Cross-Validation: Implications for Practical Breeding

Frontiers in plant science, 2020-12, Vol.11, p.592977-592977

2020

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Assessment of long-term trends in genetic mean and variance after the introduction of genomic selection in layers: a simulation study

Frontiers in genetics, 2023-05, Vol.14, p.1168212-1168212

2023

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Increasing Genomic‐Enabled Prediction Accuracy by Modeling Genotype × Environment Interactions in Kansas Wheat

The plant genome, 2017-07, Vol.10 (2), p.1-15

2017

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Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations

Crop science, 2021-07, Vol.61 (4), p.2243-2253

2021

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Temporal and genomic analysis of additive genetic variance in breeding programmes

Heredity, 2022-01, Vol.128 (1), p.21-32

2022

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In silico simulation of future hybrid performance to evaluate heterotic pool formation in a self-pollinating crop

Scientific reports, 2020-03, Vol.10 (1), p.4037-4037, Article 4037

2020

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Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding

Frontiers in plant science, 2021-02, Vol.12, p.605172-605172

2021

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Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection

Theoretical and applied genetics, 2018-09, Vol.131 (9), p.1953-1966

2018

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AlphaSim: Software for Breeding Program Simulation

The plant genome, 2016-11, Vol.9 (3), p.1-14

2016

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Phenomic and genomic prediction of yield on multiple locations in winter wheat

Frontiers in genetics, 2023-05, Vol.14, p.1164935-1164935

2023

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Genomic and phenotypic characterization of finger millet indicates a complex diversification history

The plant genome, 2024-03, Vol.17 (1), p.e20392-n/a

2024

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Genomic evaluations using data recorded on smallholder dairy farms in low- to middle-income countries

JDS communications, 2021-11, Vol.2 (6), p.366-370

2021

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A Strategy To Exploit Surrogate Sire Technology in Livestock Breeding Programs

G3 : genes - genomes - genetics, 2019-01, Vol.9 (1), p.203-215

2019

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Genomic selection using random regressions on known and latent environmental covariates

Theoretical and applied genetics, 2022-10, Vol.135 (10), p.3393-3415

2022

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Genomic selection strategies for clonally propagated crops

Theoretical and applied genetics, 2023-04, Vol.136 (4), p.74-74, Article 74

2023

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The effects of training population design on genomic prediction accuracy in wheat

Theoretical and applied genetics, 2019-07, Vol.132 (7), p.1943-1952

2019

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Correction to: Genomic selection using random regressions on known and latent environmental covariates

Theoretical and applied genetics, 2023-08, Vol.136 (8), p.178-178, Article 178

2023

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A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations

Theoretical and applied genetics, 2018-11, Vol.131 (11), p.2345-2357

2018

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Removal of alleles by genome editing (RAGE) against deleterious load

Genetics selection evolution (Paris), 2019-04, Vol.51 (1), p.14-14, Article 14

2019

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Maximizing the potential of multi-parental crop populations

Applied & translational genomics, 2016-12, Vol.11, p.9-17

2016

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A Two‐Part Strategy for Using Genomic Selection to Develop Inbred Lines

Crop science, 2017-09, Vol.57 (5), p.2372-2386

2017

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Comparison of genomic prediction models for general combining ability in early stages of hybrid breeding programs

Crop science, 2023-11, Vol.63 (6), p.3338-3355

2023

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AlphaSimR: an R package for breeding program simulations

Novel combination of CRISPR-based gene drives eliminates resistance and localises spread

Genomic Selection for Processing and End‐Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program

How Population Structure Impacts Genomic Selection Accuracy in Cross-Validation: Implications for Practical Breeding

Assessment of long-term trends in genetic mean and variance after the introduction of genomic selection in layers: a simulation study

Increasing Genomic‐Enabled Prediction Accuracy by Modeling Genotype × Environment Interactions in Kansas Wheat

Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations

Temporal and genomic analysis of additive genetic variance in breeding programmes

In silico simulation of future hybrid performance to evaluate heterotic pool formation in a self-pollinating crop

Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding

Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection

AlphaSim: Software for Breeding Program Simulation

Phenomic and genomic prediction of yield on multiple locations in winter wheat

Genomic and phenotypic characterization of finger millet indicates a complex diversification history

Genomic evaluations using data recorded on smallholder dairy farms in low- to middle-income countries

A Strategy To Exploit Surrogate Sire Technology in Livestock Breeding Programs

Genomic selection using random regressions on known and latent environmental covariates

Genomic selection strategies for clonally propagated crops

The effects of training population design on genomic prediction accuracy in wheat

Correction to: Genomic selection using random regressions on known and latent environmental covariates

A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations

Removal of alleles by genome editing (RAGE) against deleterious load

Maximizing the potential of multi-parental crop populations

A Two‐Part Strategy for Using Genomic Selection to Develop Inbred Lines

Comparison of genomic prediction models for general combining ability in early stages of hybrid breeding programs

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