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Characterizing cis-regulatory elements using single-cell epigenomics

Nature reviews. Genetics, 2023-01, Vol.24 (1), p.21-43

2023

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Interpreting non-coding disease-associated human variants using single-cell epigenomics

Nature reviews. Genetics, 2023-08, Vol.24 (8), p.516-534

2023

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A single-cell atlas of chromatin accessibility in the human genome

Cell, 2021-11, Vol.184 (24), p.5985-6001.e19

2021

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Detection of human adaptation during the past 2000 years

Science (American Association for the Advancement of Science), 2016-11, Vol.354 (6313), p.760-764

2016

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The power of gene-based rare variant methods to detect disease-associated variation and test hypotheses about complex disease

PLoS genetics, 2015-04, Vol.11 (4), p.e1005165-e1005165

2015

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The miRNA profile of human pancreatic islets and beta-cells and relationship to type 2 diabetes pathogenesis

PloS one, 2013-01, Vol.8 (1), p.e55272-e55272

2013

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138-OR: Characterization and Prediction of Genetic Risk of T1D in Individuals without HLA-DR3 or HLA-DR4

Diabetes (New York, N.Y.), 2023-06, Vol.72 (Supplement_1), p.1

2023

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Mechanisms of Type 2 Diabetes Risk Loci

Current diabetes reports, 2017-09, Vol.17 (9), p.72-72, Article 72

Gaulton, Kyle J.

2017

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Transcript Expression Data from Human Islets Links Regulatory Signals from Genome-Wide Association Studies for Type 2 Diabetes and Glycemic Traits to Their Downstream Effectors

PLoS genetics, 2015-12, Vol.11 (12), p.e1005694-e1005694

2015

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Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk

Nature genetics, 2021-04, Vol.53 (4), p.455-466

2021

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Interpreting type 1 diabetes risk with genetics and single-cell epigenomics

Nature (London), 2021-06, Vol.594 (7863), p.398-402

2021

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Glucocorticoid signaling in pancreatic islets modulates gene regulatory programs and genetic risk of type 2 diabetes

PLoS genetics, 2021-05, Vol.17 (5), p.e1009531

2021

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Leveraging type 1 diabetes human genetic and genomic data in the T1D knowledge portal

PLoS biology, 2023-08, Vol.21 (8), p.e3002233-e3002233

2023

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Identification of a regulatory variant that binds FOXA1 and FOXA2 at the CDC123/CAMK1D type 2 diabetes GWAS locus

PLoS genetics, 2014-09, Vol.10 (9), p.e1004633

2014

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Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis

PLoS medicine, 2018-09, Vol.15 (9), p.e1002654-e1002654

2018

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Common DNA sequence variation influences 3-dimensional conformation of the human genome

Genome Biology, 2019-11, Vol.20 (1), p.255-25, Article 255

2019

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1267-P: Fine-Mapping Type 1 Diabetes Risk at the MHC Locus

Diabetes (New York, N.Y.), 2022-06, Vol.71 (Supplement_1)

2022

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Lipid-induced epigenomic changes in human macrophages identify a coronary artery disease-associated variant that regulates PPAP2B Expression through Altered C/EBP-beta binding

PLoS genetics, 2015-04, Vol.11 (4), p.e1005061-e1005061

2015

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A map of open chromatin in human pancreatic islets

Nature genetics, 2010-03, Vol.42 (3), p.255-259

2010

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An atlas of gene regulatory elements in adult mouse cerebrum

Nature (London), 2021-10, Vol.598 (7879), p.129-136

2021

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Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk

Nature communications, 2019-05, Vol.10 (1), p.2078-2078, Article 2078

2019

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Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors

Nature communications, 2021-11, Vol.12 (1), p.6636-6636, Article 6636

2021

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Systematic analysis of binding of transcription factors to noncoding variants

Nature (London), 2021-03, Vol.591 (7848), p.147-151

2021

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Characterizing cis-regulatory elements using single-cell epigenomics

Interpreting non-coding disease-associated human variants using single-cell epigenomics

A single-cell atlas of chromatin accessibility in the human genome

Detection of human adaptation during the past 2000 years

The power of gene-based rare variant methods to detect disease-associated variation and test hypotheses about complex disease

The miRNA profile of human pancreatic islets and beta-cells and relationship to type 2 diabetes pathogenesis

138-OR: Characterization and Prediction of Genetic Risk of T1D in Individuals without HLA-DR3 or HLA-DR4

Mechanisms of Type 2 Diabetes Risk Loci

Transcript Expression Data from Human Islets Links Regulatory Signals from Genome-Wide Association Studies for Type 2 Diabetes and Glycemic Traits to Their Downstream Effectors

Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk

Interpreting type 1 diabetes risk with genetics and single-cell epigenomics

Glucocorticoid signaling in pancreatic islets modulates gene regulatory programs and genetic risk of type 2 diabetes

Leveraging type 1 diabetes human genetic and genomic data in the T1D knowledge portal

Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants

Identification of a regulatory variant that binds FOXA1 and FOXA2 at the CDC123/CAMK1D type 2 diabetes GWAS locus

Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis

Common DNA sequence variation influences 3-dimensional conformation of the human genome

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

1267-P: Fine-Mapping Type 1 Diabetes Risk at the MHC Locus

Lipid-induced epigenomic changes in human macrophages identify a coronary artery disease-associated variant that regulates PPAP2B Expression through Altered C/EBP-beta binding

A map of open chromatin in human pancreatic islets

An atlas of gene regulatory elements in adult mouse cerebrum

Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk

Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors

Systematic analysis of binding of transcription factors to noncoding variants

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