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High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations

Proceedings of the National Academy of Sciences - PNAS, 2013-10, Vol.110 (42), p.16820-16825

2013

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Cosolvent effects on protein stability

Annual review of physical chemistry, 2013-01, Vol.64 (1), p.273-293

2013

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Characterization of Aβ Monomers through the Convergence of Ensemble Properties among Simulations with Multiple Force Fields

The journal of physical chemistry. B, 2016-01, Vol.120 (2), p.259-277

2016

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Interplay Among Tertiary Contacts, Secondary Structure Formation and Side-chain Packing in the Protein Folding Mechanism: All-atom Representation Study of Protein L

Journal of molecular biology, 2003-02, Vol.326 (3), p.933-954

2003

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Free Energy of Translocating an Arginine-Rich Cell-Penetrating Peptide across a Lipid Bilayer Suggests Pore Formation

Biophysical journal, 2013-01, Vol.104 (2), p.412-420

2013

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Equilibrium Study of Protein Denaturation by Urea

Journal of the American Chemical Society, 2010-02, Vol.132 (7), p.2338-2344

2010

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Water Determines the Structure and Dynamics of Proteins

Chemical reviews, 2016-07, Vol.116 (13), p.7673-7697

2016

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The Plasma Membrane as a Competitive Inhibitor and Positive Allosteric Modulator of KRas4B Signaling

Biophysical journal, 2020-03, Vol.118 (5), p.1129-1141

2020

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Methionine 170 is an Environmentally Sensitive Membrane Anchor in the Disordered HVR of K‑Ras4B

The journal of physical chemistry. B, 2018-11, Vol.122 (44), p.10086-10096

2018

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Peptide folding simulations

Current opinion in structural biology, 2003-04, Vol.13 (2), p.168-174

2003

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Multisite Ion Model in Concentrated Solutions of Divalent Cations (MgCl2 and CaCl2): Osmotic Pressure Calculations

The journal of physical chemistry. B, 2015-01, Vol.119 (1), p.219-227

2015

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Mechanistic insights into allosteric regulation of the A2A adenosine G protein-coupled receptor by physiological cations

Nature communications, 2018-04, Vol.9 (1), p.1-13, Article 1372

2018

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Can Specific Protein-Lipid Interactions Stabilize an Active State of the Beta 2 Adrenergic Receptor?

Biophysical journal, 2015-10, Vol.109 (8), p.1652-1662

2015

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Backbone and Side-Chain Contributions in Protein Denaturation by Urea

Biophysical journal, 2011-03, Vol.100 (6), p.1526-1533

2011

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Aβ Monomers Transiently Sample Oligomer and Fibril-Like Configurations: Ensemble Characterization Using a Combined MD/NMR Approach

Journal of molecular biology, 2013-09, Vol.425 (18), p.3338-3359

2013

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Influence of water-protein hydrogen bonding on the stability of Trp-cage miniprotein. A comparison between the TIP3P and TIP4P-Ew water models

Physical chemistry chemical physics : PCCP, 2011-11, Vol.13 (44), p.1984-19847

2011

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Presence or Absence of Ras Dimerization Shows Distinct Kinetic Signature in Ras-Raf Interaction

Biophysical journal, 2020-04, Vol.118 (8), p.1799-1810

2020

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Cavities determine the pressure unfolding of proteins

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (18), p.6945-6950

2012

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Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes

Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (52), p.20805-20810

2007

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Computing the Stability Diagram of the Trp-Cage Miniprotein

Proceedings of the National Academy of Sciences - PNAS, 2008-11, Vol.105 (46), p.17754-17759

2008

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Free-energy landscape of a hyperstable RNA tetraloop

Proceedings of the National Academy of Sciences - PNAS, 2016-06, Vol.113 (24), p.6665-6670

2016

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Acceleration of Lateral Equilibration in Mixed Lipid Bilayers Using Replica Exchange with Solute Tempering

Journal of chemical theory and computation, 2014-10, Vol.10 (10), p.4264-4272

2014

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Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein

Proteins, structure, function, and bioinformatics, 2010-06, Vol.78 (8), p.1889-1899

2010

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Characterization of Heparin’s Conformational Ensemble by Molecular Dynamics Simulations and Nuclear Magnetic Resonance Spectroscopy

Journal of chemical theory and computation, 2022-03, Vol.18 (3), p.1894-1904

2022

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Alterations of Nonconserved Residues Affect Protein Stability and Folding Dynamics through Charge–Charge Interactions

The journal of physical chemistry. B, 2015-10, Vol.119 (41), p.13103-13112

2015

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High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations

Cosolvent effects on protein stability

Characterization of Aβ Monomers through the Convergence of Ensemble Properties among Simulations with Multiple Force Fields

Interplay Among Tertiary Contacts, Secondary Structure Formation and Side-chain Packing in the Protein Folding Mechanism: All-atom Representation Study of Protein L

Free Energy of Translocating an Arginine-Rich Cell-Penetrating Peptide across a Lipid Bilayer Suggests Pore Formation

Equilibrium Study of Protein Denaturation by Urea

Water Determines the Structure and Dynamics of Proteins

The Plasma Membrane as a Competitive Inhibitor and Positive Allosteric Modulator of KRas4B Signaling

Methionine 170 is an Environmentally Sensitive Membrane Anchor in the Disordered HVR of K‑Ras4B

Peptide folding simulations

Multisite Ion Model in Concentrated Solutions of Divalent Cations (MgCl2 and CaCl2): Osmotic Pressure Calculations

Mechanistic insights into allosteric regulation of the A2A adenosine G protein-coupled receptor by physiological cations

Can Specific Protein-Lipid Interactions Stabilize an Active State of the Beta 2 Adrenergic Receptor?

Backbone and Side-Chain Contributions in Protein Denaturation by Urea

Aβ Monomers Transiently Sample Oligomer and Fibril-Like Configurations: Ensemble Characterization Using a Combined MD/NMR Approach

Influence of water-protein hydrogen bonding on the stability of Trp-cage miniprotein. A comparison between the TIP3P and TIP4P-Ew water models

Presence or Absence of Ras Dimerization Shows Distinct Kinetic Signature in Ras-Raf Interaction

Cavities determine the pressure unfolding of proteins

Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes

Computing the Stability Diagram of the Trp-Cage Miniprotein

Free-energy landscape of a hyperstable RNA tetraloop

Acceleration of Lateral Equilibration in Mixed Lipid Bilayers Using Replica Exchange with Solute Tempering

Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein

Characterization of Heparin’s Conformational Ensemble by Molecular Dynamics Simulations and Nuclear Magnetic Resonance Spectroscopy

Alterations of Nonconserved Residues Affect Protein Stability and Folding Dynamics through Charge–Charge Interactions

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