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Quantitative multi-year elucidation of fecal sources of waterborne pathogen contamination in the South Nation River basin using Bacteroidales microbial source tracking markers

Water research (Oxford), 2013-05, Vol.47 (7), p.2315-2324

2013

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An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal samples

Journal of microbiological methods, 2012-12, Vol.91 (3), p.506-513

2012

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Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains

Applied and Environmental Microbiology, 2010-01, Vol.76 (2), p.474-482

2010

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Everything at once: Comparative analysis of the genomes of bacterial pathogens

Veterinary microbiology, 2011-11, Vol.153 (1), p.13-26

2011

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Rapid Determination of Escherichia coli O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting

Applied and Environmental Microbiology, 2008-11, Vol.74 (21), p.6606-6615

2008

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Identification of Salmonella enterica species- and subgroup-specific genomic regions using Panseq 2.0

Infection, genetics and evolution, 2011-12, Vol.11 (8), p.2151-2161

2011

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The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

PloS one, 2016-01, Vol.11 (1), p.e0147101-e0147101

2016

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Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

BMC bioinformatics, 2010-09, Vol.11 (1), p.461-461, Article 461

2010

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Distribution of heavy metal resistance elements in Canadian Salmonella 4,[5],12:i:- populations and association with the monophasic genotypes and phenotype

PloS one, 2020-07, Vol.15 (7), p.e0236436

2020

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Pan-genome Analyses of the Species Salmonella enterica , and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar

Frontiers in microbiology, 2017-07, Vol.8, p.1345-1345

2017

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ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data

Microbial genomics, 2021-12, Vol.7 (12)

2021

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Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems

International journal of food microbiology, 2014-09, Vol.187, p.57-72

2014

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Phylotyper: in silico predictor of gene subtypes

Bioinformatics (Oxford, England), 2017-11, Vol.33 (22), p.3638-3641

2017

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Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle

PloS one, 2016-03, Vol.11 (3), p.e0151673-e0151673

2016

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A comparison of Shiga-toxin 2 bacteriophage from classical enterohemorrhagic Escherichia coli serotypes and the German E. coli O104:H4 outbreak strain

PloS one, 2012-05, Vol.7 (5), p.e37362

2012

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Genome evolution in major Escherichia coli O157:H7 lineages

BMC genomics, 2007-05, Vol.8 (1), p.121-121, Article 121

2007

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"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures

Frontiers in microbiology, 2020-04, Vol.11, p.541-541

2020

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A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains

Frontiers in microbiology, 2017-06, Vol.8, p.1224-1224

2017

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Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni

Journal of Clinical Microbiology, 2012-03, Vol.50 (3), p.788-797

2012

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Detection of Bacteroidales fecal indicators and the zoonotic pathogens E. coli 0157:H7, salmonella, and campylobacter in river water

Environmental science & technology, 2007-03, Vol.41 (6), p.1856

2007

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Spatiotemporal Analysis of Cryptosporidium Species/Genotypes and Relationships with Other Zoonotic Pathogens in Surface Water from Mixed-Use Watersheds

Applied and Environmental Microbiology, 2013-01, Vol.79 (2), p.434-448

2013

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Multi-Year Persistence of Verotoxigenic Escherichia coli (VTEC) in a Closed Canadian Beef Herd: A Cohort Study

Frontiers in microbiology, 2018-08, Vol.9, p.2040-2040

2018

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SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

BMC microbiology, 2016-04, Vol.16 (61), p.65, Article 65

2016

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Spatial and Temporal Drivers of Zoonotic Pathogen Contamination of an Agricultural Watershed

Journal of environmental quality, 2012-01, Vol.41 (1), p.242-252

2012

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The EpiQuant Framework for Computing Epidemiological Concordance of Microbial Subtyping Data

Journal of clinical microbiology, 2017-05, Vol.55 (5), p.1334-1349

2017

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Quantitative multi-year elucidation of fecal sources of waterborne pathogen contamination in the South Nation River basin using Bacteroidales microbial source tracking markers

An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal samples

Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains

Everything at once: Comparative analysis of the genomes of bacterial pathogens

Rapid Determination of Escherichia coli O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting

Identification of Salmonella enterica species- and subgroup-specific genomic regions using Panseq 2.0

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

Distribution of heavy metal resistance elements in Canadian Salmonella 4,[5],12:i:- populations and association with the monophasic genotypes and phenotype

Pan-genome Analyses of the Species Salmonella enterica , and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar

ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data

Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems

Phylotyper: in silico predictor of gene subtypes

Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle

A comparison of Shiga-toxin 2 bacteriophage from classical enterohemorrhagic Escherichia coli serotypes and the German E. coli O104:H4 outbreak strain

Genome evolution in major Escherichia coli O157:H7 lineages

"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures

A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains

Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni

Detection of Bacteroidales fecal indicators and the zoonotic pathogens E. coli 0157:H7, salmonella, and campylobacter in river water

Spatiotemporal Analysis of Cryptosporidium Species/Genotypes and Relationships with Other Zoonotic Pathogens in Surface Water from Mixed-Use Watersheds

Multi-Year Persistence of Verotoxigenic Escherichia coli (VTEC) in a Closed Canadian Beef Herd: A Cohort Study

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli

Spatial and Temporal Drivers of Zoonotic Pathogen Contamination of an Agricultural Watershed

The EpiQuant Framework for Computing Epidemiological Concordance of Microbial Subtyping Data

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