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A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity

Nature communications, 2020-05, Vol.11 (1), p.2680-2680, Article 2680

2020

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QuasR: quantification and annotation of short reads in R

Bioinformatics, 2015-04, Vol.31 (7), p.1130-1132

2015

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Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation

Nature biotechnology, 2015-07, Vol.33 (7), p.722-729

2015

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Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions

PLoS genetics, 2013-12, Vol.9 (12), p.e1003994

2013

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Inference of miRNA targets using evolutionary conservation and pathway analysis

BMC bioinformatics, 2007-03, Vol.8 (1), p.69-69, Article 69

2007

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Identification of active regulatory regions from DNA methylation data

Nucleic acids research, 2013-09, Vol.41 (16), p.e155-e155

2013

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Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery

Cell, 2012-08, Vol.150 (5), p.934-947

2012

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DNA-binding factors shape the mouse methylome at distal regulatory regions

Nature (London), 2011-12, Vol.480 (7378), p.490-495

2011

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The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function

Nucleic acids research, 2013-01, Vol.41 (1), p.518-532

2013

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Perinuclear Anchoring of H3K9-Methylated Chromatin Stabilizes Induced Cell Fate in C. elegans Embryos

Cell, 2015-12, Vol.163 (6), p.1333-1347

2015

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Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei

Nature (London), 2019-05, Vol.569 (7758), p.734-739

2019

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H3K9me selectively blocks transcription factor activity and ensures differentiated tissue integrity

Nature cell biology, 2021-11, Vol.23 (11), p.1163-1175

2021

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Transcriptional code and disease map for adult retinal cell types

Nature neuroscience, 2012-03, Vol.15 (3), p.487-495

2012

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LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay

Nature cell biology, 2020-05, Vol.22 (5), p.579-590

2020

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Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop

Nature medicine, 2012-04, Vol.18 (4), p.529-537

2012

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MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells

Nature structural & molecular biology, 2008-03, Vol.15 (3), p.259-267

2008

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A novel class of small RNAs bind to MILI protein in mouse testes

Nature, 2006-07, Vol.442 (7099), p.203-207

2006

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Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition

Nature communications, 2018-04, Vol.9 (1), p.1549-15, Article 1549

2018

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DNA sequence explains seemingly disordered methylation levels in partially methylated domains of Mammalian genomes

PLoS genetics, 2014-02, Vol.10 (2), p.e1004143-e1004143

2014

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Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells

PLoS genetics, 2011-06, Vol.7 (6), p.e1002090-e1002090

2011

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Strand-specific 5'-O-methylation of siRNA duplexes controls guide strand selection and targeting specificity

RNA (Cambridge), 2008-02, Vol.14 (2), p.263-274

2008

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Nuclear Retention of Fission Yeast Dicer Is a Prerequisite for RNAi-Mediated Heterochromatin Assembly

Developmental cell, 2010-01, Vol.18 (1), p.102-113

2010

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The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans

PLoS genetics, 2018-03, Vol.14 (3), p.e1007252-e1007252

2018

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RNAi keeps Atf1-bound stress response genes in check at nuclear pores

Genes & development, 2012-04, Vol.26 (7), p.683-692

2012

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Genome-wide analysis of GLD-1-mediated mRNA regulation suggests a role in mRNA storage

PLoS genetics, 2012-05, Vol.8 (5), p.e1002742-e1002742

2012

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A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity

QuasR: quantification and annotation of short reads in R

Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation

Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions

Inference of miRNA targets using evolutionary conservation and pathway analysis

Identification of active regulatory regions from DNA methylation data

Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery

DNA-binding factors shape the mouse methylome at distal regulatory regions

The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function

Perinuclear Anchoring of H3K9-Methylated Chromatin Stabilizes Induced Cell Fate in C. elegans Embryos

Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei

H3K9me selectively blocks transcription factor activity and ensures differentiated tissue integrity

Transcriptional code and disease map for adult retinal cell types

LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay

Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop

MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells

A novel class of small RNAs bind to MILI protein in mouse testes

Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition

DNA sequence explains seemingly disordered methylation levels in partially methylated domains of Mammalian genomes

Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells

Strand-specific 5'-O-methylation of siRNA duplexes controls guide strand selection and targeting specificity

Nuclear Retention of Fission Yeast Dicer Is a Prerequisite for RNAi-Mediated Heterochromatin Assembly

The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans

RNAi keeps Atf1-bound stress response genes in check at nuclear pores

Genome-wide analysis of GLD-1-mediated mRNA regulation suggests a role in mRNA storage

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