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Alternative cleavage and polyadenylation in health and disease

Nature reviews. Genetics, 2019-10, Vol.20 (10), p.599-614

2019

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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation

Genome research, 2016-08, Vol.26 (8), p.1145-1159

2016

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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Genome Biology, 2015-07, Vol.16 (1), p.150-150, Article 150

2015

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Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC

Genome Biology, 2018-03, Vol.19 (1), p.44-44, Article 44

2018

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Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length

Cell reports (Cambridge), 2012-06, Vol.1 (6), p.753-763

2012

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PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing

Nucleic acids research, 2020-01, Vol.48 (D1), p.D174

2020

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Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells

Nature communications, 2014-11, Vol.5 (1), p.5465-5465, Article 5465

2014

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Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms

Nature methods, 2018-10, Vol.15 (10), p.832-836

2018

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RNAalifold: improved consensus structure prediction for RNA alignments

BMC bioinformatics, 2008-11, Vol.9 (1), p.474-474, Article 474

2008

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ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

Genome research, 2014-05, Vol.24 (5), p.869-884

2014

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An updated human snoRNAome

Nucleic acids research, 2016-06, Vol.44 (11), p.5068-5082

2016

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Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33

Genes & development, 2014-11, Vol.28 (21), p.2381-2393

2014

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The Vienna RNA websuite

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W70-W74

2008

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Investigating the Human Host-ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox

Viruses, 2022-06, Vol.14 (7), p.1436-16

2022

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MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer

Nature communications, 2024-05, Vol.15 (1), p.4110-4110, Article 4110

2024

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Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs

Nature structural & molecular biology, 2013-08, Vol.20 (8), p.936-943

2013

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Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

Genome biology, 2013-05, Vol.14 (5), p.R45-R45, Article R45

2013

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Reply to 'A different perspective on alternative cleavage and polyadenylation'

Nature reviews. Genetics, 2020-01, Vol.21 (1), p.63-64

2020

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scTEA-db: a comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes

Nucleic acids research, 2024-01, Vol.52 (D1), p.D1018-D1023

2024

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Neutrophils-From Bone Marrow to First-Line Defense of the Innate Immune System

Frontiers in immunology, 2021-12, Vol.12, p.767175-767175

2021

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Cleavage factor Im is a key regulator of 3′ UTR length

RNA biology, 2012-12, Vol.9 (12), p.1405-1412

2012

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The ViennaRNA web services

Methods in molecular biology (Clifton, N.J.), 2015, Vol.1269, p.307

2015

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Analysis of 10,478 cancer genomes identifies candidate driver genes and opportunities for precision oncology

Nature genetics, 2024-09, Vol.56 (9), p.1868-1877

2024

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Systematic identification of functional SNPs interrupting 3’UTR polyadenylation signals

PLoS genetics, 2020-08, Vol.16 (8), p.e1008977

2020

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Mobility of traffic-related Pd and Pt species in soils evaluated by sequential extraction

Environmental pollution (1987), 2018-11, Vol.242 (Pt B), p.1119-1127

2018

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Alternative cleavage and polyadenylation in health and disease

A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC

Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3' end sequencing

Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells

Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms

RNAalifold: improved consensus structure prediction for RNA alignments

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

An updated human snoRNAome

Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33

The Vienna RNA websuite

Investigating the Human Host-ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox

MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

Reply to 'A different perspective on alternative cleavage and polyadenylation'

scTEA-db: a comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes

Neutrophils-From Bone Marrow to First-Line Defense of the Innate Immune System

Cleavage factor Im is a key regulator of 3′ UTR length

The ViennaRNA web services

Analysis of 10,478 cancer genomes identifies candidate driver genes and opportunities for precision oncology

Systematic identification of functional SNPs interrupting 3’UTR polyadenylation signals

Mobility of traffic-related Pd and Pt species in soils evaluated by sequential extraction

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