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OMA 2011: orthology inference among 1000 complete genomes

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D289-D294

2011

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Darwin v. 2.0: an interpreted computer language for the biosciences

Bioinformatics, 2000-02, Vol.16 (2), p.101-103

2000

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Exhaustive Matching of the Entire Protein Sequence Database

Science (American Association for the Advancement of Science), 1992-06, Vol.256 (5062), p.1443-1445

1992

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Using traveling salesman problem algorithms for evolutionary tree construction

Bioinformatics, 2000-07, Vol.16 (7), p.619-627

2000

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Amino acid substitution during functionally constrained divergent evolution of protein sequences

Protein engineering, 1994-11, Vol.7 (11), p.1323-1332

1994

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Empirical and Structural Models for Insertions and Deletions in the Divergent Evolution of Proteins

Journal of molecular biology, 1993-02, Vol.229 (4), p.1065-1082

1993

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An analysis of simultaneous variation in protein structures

Protein engineering, 1997-04, Vol.10 (4), p.307-316

1997

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Analysis of Amino Acid Substitution during Divergent Evolution: The 400 by 400 Dipeptide Substitution Matrix

Biochemical and biophysical research communications, 1994-03, Vol.199 (2), p.489-496

1994

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First Leaves: A Tutorial Introduction to Maple V

1, 1992

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Fast text searching for regular expressions or automaton searching on tries

Journal of the ACM, 1996-11, Vol.43 (6), p.915-936

1996

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An analysis of the helix-to-strand transition between peptides with identical sequence

Proteins, structure, function, and bioinformatics, 2000-11, Vol.41 (2), p.248-256

2000

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The nitrogenase MoFe protein: A secondary structure prediction

FEBS letters, 1993-03, Vol.318 (2), p.118-124

1993

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Evaluation measures of multiple sequence alignments

Journal of computational biology, 2000-02, Vol.7 (1-2), p.261-276

2000

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Empirical codon substitution matrix

BMC bioinformatics, 2005-06, Vol.6 (1), p.134-134, Article 134

2005

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An analysis of the Karp-Rabin string matching algorithm

Information processing letters, 1990-05, Vol.34 (5), p.271-274

1990

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Expected Length of the Longest Probe Sequence in Hash Code Searching

Journal of the ACM, 1981-04, Vol.28 (2), p.289-304

Gonnet, Gaston H.

1981

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A predicted consensus structure for the N-Terminal fragment of the heat shock protein HSP90 family

Proteins, structure, function, and bioinformatics, 1997-03, Vol.27 (3), p.450-458

1997

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SynPAM-A Distance Measure Based on Synonymous Codon Substitutions

IEEE/ACM transactions on computational biology and bioinformatics, 2007-10, Vol.4 (4), p.553-560

2007

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A word in your protein

Nature (London), 1993-01, Vol.361 (6408), p.121-121

1993

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Fast String Matching with Mismatches

Information and computation, 1994-02, Vol.108 (2), p.187-199

1994

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Heaps on heaps

SIAM journal on computing, 1986-11, Vol.15 (4), p.964-971

1986

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A dimensionless fit measure for phylogenetic distance trees

Journal of bioinformatics and computational biology, 2005-12, Vol.3 (6), p.1429-1440

2005

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A combinatorial distance-constraint approach to predicting protein tertiary models from known secondary structure

Folding & design, 1998-01, Vol.3 (3), p.149-160

1998

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On Boyer-Moore automata

Algorithmica, 1994-11, Vol.12 (4-5), p.268-292

1994

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OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements

Comparative Genomics, p.61-72

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OMA 2011: orthology inference among 1000 complete genomes

Darwin v. 2.0: an interpreted computer language for the biosciences

Exhaustive Matching of the Entire Protein Sequence Database

Using traveling salesman problem algorithms for evolutionary tree construction

Amino acid substitution during functionally constrained divergent evolution of protein sequences

Empirical and Structural Models for Insertions and Deletions in the Divergent Evolution of Proteins

An analysis of simultaneous variation in protein structures

Analysis of Amino Acid Substitution during Divergent Evolution: The 400 by 400 Dipeptide Substitution Matrix

First Leaves: A Tutorial Introduction to Maple V

Fast text searching for regular expressions or automaton searching on tries

An analysis of the helix-to-strand transition between peptides with identical sequence

The nitrogenase MoFe protein: A secondary structure prediction

Evaluation measures of multiple sequence alignments

Empirical codon substitution matrix

An analysis of the Karp-Rabin string matching algorithm

Expected Length of the Longest Probe Sequence in Hash Code Searching

A predicted consensus structure for the N-Terminal fragment of the heat shock protein HSP90 family

SynPAM-A Distance Measure Based on Synonymous Codon Substitutions

A word in your protein

Fast String Matching with Mismatches

Heaps on heaps

A dimensionless fit measure for phylogenetic distance trees

A combinatorial distance-constraint approach to predicting protein tertiary models from known secondary structure

On Boyer-Moore automata

OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements

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