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Recapitulation of the embryonic transcriptional program in holometabolous insect pupae

Scientific reports, 2022-10, Vol.12 (1), p.17570-17570, Article 17570

2022

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Genome-wide analysis of cell type-specific gene transcription during spore formation in Clostridium difficile

PLoS genetics, 2013-10, Vol.9 (10), p.e1003756-e1003756

2013

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GntR Family of Bacterial Transcription Factors and Their DNA Binding Motifs: Structure, Positioning and Co-Evolution

PloS one, 2015-07, Vol.10 (7), p.e0132618-e0132618

2015

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Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica

Journal of Bacteriology, 2013-06, Vol.195 (12), p.2786-2792

2013

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Pangenomic Definition of Prokaryotic Species and the Phylogenetic Structure of Prochlorococcus spp

Frontiers in microbiology, 2018-03, Vol.9, p.428-428

2018

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Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

BMC genomics, 2009-02, Vol.10 (1), p.78-78, Article 78

2009

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Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila

Nature communications, 2019-03, Vol.10 (1), p.1176-1176, Article 1176

2019

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Evolution of the Exon-Intron Structure in Ciliate Genomes

PloS one, 2016-09, Vol.11 (9), p.e0161476-e0161476

2016

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Comparative Analysis of the IclR-Family of Bacterial Transcription Factors and Their DNA-Binding Motifs: Structure, Positioning, Co-Evolution, Regulon Content

Frontiers in microbiology, 2021-06, Vol.12, p.675815-675815

2021

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Order and stochasticity in the folding of individual Drosophila genomes

Nature communications, 2021-01, Vol.12 (1), p.41-41, Article 41

2021

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A hierarchy in clusters of cephalopod mRNA editing sites

Scientific reports, 2022-03, Vol.12 (1), p.3447-3447, Article 3447

2022

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De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

BMC genomics, 2011-01, Vol.12 (1), p.30-30, Article 30

2011

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Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp

BMC genomics, 2018-12, Vol.19 (1), p.965-17, Article 965

2018

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Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen Clostridioides difficile

Frontiers in microbiology, 2020-08, Vol.11, p.1939-1939

2020

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Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria

Frontiers in microbiology, 2016-08, Vol.7, p.1343-1343

2016

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Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria

Frontiers in microbiology, 2019-03, Vol.10, p.642-642

2019

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Phylogeny and structural modeling of the transcription factor CsqR (YihW) from Escherichia coli

Scientific reports, 2024-04, Vol.14 (1), p.7852-7852, Article 7852

2024

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Comparative genomic analysis of fungal TPP-riboswitches

Fungal genetics and biology, 2018-05, Vol.114, p.34-41

2018

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Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data

PLoS computational biology, 2021-11, Vol.17 (11), p.e1009546-e1009546

2021

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Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia

Scientific reports, 2022-04, Vol.12 (1), p.6868-6868, Article 6868

2022

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How Gene Order Is Influenced by the Biophysics of Transcription Regulation

Proceedings of the National Academy of Sciences - PNAS, 2007-08, Vol.104 (35), p.13948-13953

2007

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Comparative and Functional Genomic Analysis of Prokaryotic Nickel and Cobalt Uptake Transporters: Evidence for a Novel Group of ATP-Binding Cassette Transporters

Journal of Bacteriology, 2006-01, Vol.188 (1), p.317-327

2006

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Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria

BMC genomics, 2022-08, Vol.23 (Suppl 6), p.558-558, Article 558

2022

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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D111-D118

2010

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Translation at first sight: the influence of leading codons

Nucleic acids research, 2020-07, Vol.48 (12), p.6931-6942

2020

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Recapitulation of the embryonic transcriptional program in holometabolous insect pupae

Genome-wide analysis of cell type-specific gene transcription during spore formation in Clostridium difficile

GntR Family of Bacterial Transcription Factors and Their DNA Binding Motifs: Structure, Positioning and Co-Evolution

Evolution of Pan-Genomes of Escherichia coli, Shigella spp., and Salmonella enterica

Pangenomic Definition of Prokaryotic Species and the Phylogenetic Structure of Prochlorococcus spp

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila

Evolution of the Exon-Intron Structure in Ciliate Genomes

Comparative Analysis of the IclR-Family of Bacterial Transcription Factors and Their DNA-Binding Motifs: Structure, Positioning, Co-Evolution, Regulon Content

Order and stochasticity in the folding of individual Drosophila genomes

A hierarchy in clusters of cephalopod mRNA editing sites

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp

Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen Clostridioides difficile

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria

Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria

Phylogeny and structural modeling of the transcription factor CsqR (YihW) from Escherichia coli

Comparative genomic analysis of fungal TPP-riboswitches

Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data

Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia

How Gene Order Is Influenced by the Biophysics of Transcription Regulation

Comparative and Functional Genomic Analysis of Prokaryotic Nickel and Cobalt Uptake Transporters: Evidence for a Novel Group of ATP-Binding Cassette Transporters

Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

Translation at first sight: the influence of leading codons

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