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Chaste: an open source C++ library for computational physiology and biology

PLoS computational biology, 2013-03, Vol.9 (3), p.e1002970-e1002970

2013

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Comparing individual-based approaches to modelling the self-organization of multicellular tissues

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005387-e1005387

2017

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The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005400-e1005400

2017

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Four Ways to Fit an Ion Channel Model

Biophysical journal, 2019-12, Vol.117 (12), p.2420-2437

2019

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Retuning the Catalytic Bias and Overpotential of a [NiFe]-Hydrogenase via a Single Amino Acid Exchange at the Electron Entry/Exit Site

Journal of the American Chemical Society, 2017-08, Vol.139 (31), p.10677-10686

2017

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Rapid Characterization of hERG Channel Kinetics I: Using an Automated High-Throughput System

Biophysical journal, 2019-12, Vol.117 (12), p.2438-2454

2019

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Importance of modelling hERG binding in predicting drug-induced action potential prolongations for drug safety assessment

Frontiers in pharmacology, 2023-03, Vol.14, p.1110555-1110555

2023

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Implementing vertex dynamics models of cell populations in biology within a consistent computational framework

Progress in biophysics and molecular biology, 2013-11, Vol.113 (2), p.299-326

2013

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A Monte Carlo method to estimate cell population heterogeneity from cell snapshot data

Journal of theoretical biology, 2021-02, Vol.511, p.110541-110541, Article 110541

2021

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Model-driven optimal experimental design for calibrating cardiac electrophysiology models

Computer methods and programs in biomedicine, 2023-10, Vol.240, p.107690-107690, Article 107690

2023

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Review of automatic pulmonary lobe segmentation methods from CT

Computerized medical imaging and graphics, 2015-03, Vol.40, p.13-29

2015

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Rapid Characterization of hERG Channel Kinetics II: Temperature Dependence

Biophysical journal, 2019-12, Vol.117 (12), p.2455-2470

2019

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Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?

Journal of molecular and cellular cardiology, 2016-07, Vol.96, p.49-62

2016

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A Spotter’s guide to dispersion in non-catalytic surface-confined voltammetry experiments

Journal of electroanalytical chemistry (Lausanne, Switzerland), 2021-08, Vol.894, p.115204, Article 115204

2021

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Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics

The Journal of physiology, 2018-05, Vol.596 (10), p.1813-1828

2018

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Accounting for variability in ion current recordings using a mathematical model of artefacts in voltage-clamp experiments

Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences, 2020-06, Vol.378 (2173), p.20190348-20190348

2020

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Simulating clinical trials for model-informed precision dosing: using warfarin treatment as a use case

Frontiers in pharmacology, 2023-10, Vol.14, p.1270443-1270443

2023

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Cardiac tissue slices: preparation, handling, and successful optical mapping

American journal of physiology. Heart and circulatory physiology, 2015-05, Vol.308 (9), p.H1112-H1125

2015

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Filter inference: A scalable nonlinear mixed effects inference approach for snapshot time series data

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011135-e1011135

2023

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Theoretical assessment of the impact of noise on heuristic parameter inference methods for surface-confined non-catalytic voltammetry experiments

Journal of electroanalytical chemistry (Lausanne, Switzerland), 2022-02, Vol.907, p.115927, Article 115927

2022

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Understanding the impact of numerical solvers on inference for differential equation models

Journal of the Royal Society interface, 2024-03, Vol.21 (212), p.20230369

2024

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Comparing two sequential Monte Carlo samplers for exact and approximate Bayesian inference on biological models

Journal of the Royal Society interface, 2017-09, Vol.14 (134)

2017

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Prediction of Thorough QT study results using action potential simulations based on ion channel screens

Journal of pharmacological and toxicological methods, 2014-11, Vol.70 (3), p.246-254

2014

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A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002515-e1002515

2012

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Tailoring Mathematical Models to Stem-Cell Derived Cardiomyocyte Lines Can Improve Predictions of Drug-Induced Changes to Their Electrophysiology

Frontiers in physiology, 2017-12, Vol.8, p.986-986

2017

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Chaste: an open source C++ library for computational physiology and biology

Comparing individual-based approaches to modelling the self-organization of multicellular tissues

The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt

Four Ways to Fit an Ion Channel Model

Retuning the Catalytic Bias and Overpotential of a [NiFe]-Hydrogenase via a Single Amino Acid Exchange at the Electron Entry/Exit Site

Rapid Characterization of hERG Channel Kinetics I: Using an Automated High-Throughput System

Importance of modelling hERG binding in predicting drug-induced action potential prolongations for drug safety assessment

Implementing vertex dynamics models of cell populations in biology within a consistent computational framework

A Monte Carlo method to estimate cell population heterogeneity from cell snapshot data

Model-driven optimal experimental design for calibrating cardiac electrophysiology models

Review of automatic pulmonary lobe segmentation methods from CT

Rapid Characterization of hERG Channel Kinetics II: Temperature Dependence

Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?

A Spotter’s guide to dispersion in non-catalytic surface-confined voltammetry experiments

Sinusoidal voltage protocols for rapid characterisation of ion channel kinetics

Accounting for variability in ion current recordings using a mathematical model of artefacts in voltage-clamp experiments

Simulating clinical trials for model-informed precision dosing: using warfarin treatment as a use case

Cardiac tissue slices: preparation, handling, and successful optical mapping

Filter inference: A scalable nonlinear mixed effects inference approach for snapshot time series data

Theoretical assessment of the impact of noise on heuristic parameter inference methods for surface-confined non-catalytic voltammetry experiments

Understanding the impact of numerical solvers on inference for differential equation models

Comparing two sequential Monte Carlo samplers for exact and approximate Bayesian inference on biological models

Prediction of Thorough QT study results using action potential simulations based on ion channel screens

A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath

Tailoring Mathematical Models to Stem-Cell Derived Cardiomyocyte Lines Can Improve Predictions of Drug-Induced Changes to Their Electrophysiology

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