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The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

Nature biotechnology, 2014-09, Vol.32 (9), p.926-932

2014

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A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

Nature communications, 2014-02, Vol.5 (1), p.3230-3230, Article 3230

2014

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Sexual dimorphism in the expression of mitochondria-related genes in rat heart at different ages

PloS one, 2015-01, Vol.10 (1), p.e0117047

2015

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Stably Expressed Genes Involved in Basic Cellular Functions

PloS one, 2017-01, Vol.12 (1), p.e0170813

2017

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Development of doxorubicin-induced chronic cardiotoxicity in the B6C3F1 mouse model

Toxicology and applied pharmacology, 2013-01, Vol.266 (1), p.109-121

2013

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Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project

Nature biotechnology, 2006-09, Vol.24 (9), p.1140-1150

2006

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Life cycle analysis of kidney gene expression in male F344 rats

PloS one, 2013-10, Vol.8 (10), p.e75305-e75305

2013

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Age and sex dependent changes in liver gene expression during the life cycle of the rat

BMC genomics, 2010-11, Vol.11 (1), p.675-675

2010

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Early transcriptional changes in cardiac mitochondria during chronic doxorubicin exposure and mitigation by dexrazoxane in mice

Toxicology and applied pharmacology, 2016-03, Vol.295, p.68-84

2016

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Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

BMC bioinformatics, 2005-07, Vol.6 Suppl 2 (S2), p.S12-S12, Article S12

2005

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Coupling global methylation and gene expression profiles reveal key pathophysiological events in liver injury induced by a methyl-deficient diet

Molecular nutrition & food research, 2011-03, Vol.55 (3), p.411-418

2011

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Transcript profiling in the testes and prostates of postnatal day 30 Sprague-Dawley rats exposed prenatally and lactationally to 2-hydroxy-4-methoxybenzophenone

Reproductive toxicology (Elmsford, N.Y.), 2018-12, Vol.82, p.111-123

2018

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Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

BMC bioinformatics, 2008-08, Vol.9 Suppl 9 (S9), p.S17-S17, Article S17

2008

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Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development

BMC genomics, 2012-06, Vol.13 (1), p.217-217

2012

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Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats

BMC bioinformatics, 2007-11, Vol.8 Suppl 7 (S7), p.S4-S4, Article S4

2007

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Hepatic Transcript Profiles of Cytochrome P450 Genes Predict Sex Differences in Drug Metabolism

Drug metabolism and disposition, 2020-06, Vol.48 (6), p.447-458

2020

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Microarray scanner calibration curves: characteristics and implications

BMC bioinformatics, 2005-07, Vol.6 Suppl 2 (S2), p.S11-S11, Article S11

2005

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Modeling chemical interaction profiles: II. Molecular docking, spectral data-activity relationship, and structure-activity relationship models for potent and weak inhibitors of cytochrome P450 CYP3A4 isozyme

Molecules (Basel, Switzerland), 2012-03, Vol.17 (3), p.3407-3460

2012

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Early biomarkers of doxorubicin-induced heart injury in a mouse model

Toxicology and applied pharmacology, 2014-12, Vol.281 (2), p.221-229

2014

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A comprehensive rat transcriptome built from large scale RNA-seq-based annotation

Nucleic acids research, 2020-09, Vol.48 (15), p.8320-8331

2020

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MicroRNA‐34a‐5p as a promising early circulating preclinical biomarker of doxorubicin‐induced chronic cardiotoxicity

Journal of applied toxicology, 2022-09, Vol.42 (9), p.1477-1490

2022

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Identification and categorization of liver toxicity markers induced by a related pair of drugs

International journal of molecular sciences, 2011-07, Vol.12 (7), p.4609-4624

2011

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Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale)

BMC bioinformatics, 2006-09, Vol.7 Suppl 2 (S2), p.S16-S16, Article S16

2006

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Candidate early predictive plasma protein markers of doxorubicin-induced chronic cardiotoxicity in B6C3F1 mice

Toxicology and applied pharmacology, 2019-01, Vol.363, p.164-173

2019

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Modeling chemical interaction profiles: I. Spectral data-activity relationship and structure-activity relationship models for inhibitors and non-inhibitors of cytochrome P450 CYP3A4 and CYP2D6 isozymes

Molecules (Basel, Switzerland), 2012-03, Vol.17 (3), p.3383-3406

2012

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The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

Sexual dimorphism in the expression of mitochondria-related genes in rat heart at different ages

Stably Expressed Genes Involved in Basic Cellular Functions

Development of doxorubicin-induced chronic cardiotoxicity in the B6C3F1 mouse model

Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project

Life cycle analysis of kidney gene expression in male F344 rats

Age and sex dependent changes in liver gene expression during the life cycle of the rat

Early transcriptional changes in cardiac mitochondria during chronic doxorubicin exposure and mitigation by dexrazoxane in mice

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

Coupling global methylation and gene expression profiles reveal key pathophysiological events in liver injury induced by a methyl-deficient diet

Transcript profiling in the testes and prostates of postnatal day 30 Sprague-Dawley rats exposed prenatally and lactationally to 2-hydroxy-4-methoxybenzophenone

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development

Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats

Hepatic Transcript Profiles of Cytochrome P450 Genes Predict Sex Differences in Drug Metabolism

Microarray scanner calibration curves: characteristics and implications

Modeling chemical interaction profiles: II. Molecular docking, spectral data-activity relationship, and structure-activity relationship models for potent and weak inhibitors of cytochrome P450 CYP3A4 isozyme

Early biomarkers of doxorubicin-induced heart injury in a mouse model

A comprehensive rat transcriptome built from large scale RNA-seq-based annotation

MicroRNA‐34a‐5p as a promising early circulating preclinical biomarker of doxorubicin‐induced chronic cardiotoxicity

Identification and categorization of liver toxicity markers induced by a related pair of drugs

Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale)

Candidate early predictive plasma protein markers of doxorubicin-induced chronic cardiotoxicity in B6C3F1 mice

Modeling chemical interaction profiles: I. Spectral data-activity relationship and structure-activity relationship models for inhibitors and non-inhibitors of cytochrome P450 CYP3A4 and CYP2D6 isozymes

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