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A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

Cell, 2012-02, Vol.148 (3), p.473-486

2012

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Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

Current biology, 2016-01, Vol.26 (1), p.38-51

2016

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Transcription factors: from enhancer binding to developmental control

Nature reviews. Genetics, 2012-09, Vol.13 (9), p.613-626

2012

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Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Nature genetics, 2019-08, Vol.51 (8), p.1272-1282

2019

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Enhancer loops appear stable during development and are associated with paused polymerase

Nature (London), 2014-08, Vol.512 (7512), p.96-100

2014

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The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

Genes & development, 2018-01, Vol.32 (1), p.42-57

2018

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Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

BMC bioinformatics, 2016-10, Vol.17 (1), p.419-419, Article 419

2016

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cis -Regulatory networks during development: a view of Drosophila

Current opinion in genetics & development, 2008-12, Vol.18 (6), p.513-520

2008

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Nature genetics, 2012-02, Vol.44 (2), p.148-156

2012

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A Versatile, Low-Cost, Multiway Microfluidic Sorter for Droplets, Cells, and Embryos

Analytical chemistry (Washington), 2018-05, Vol.90 (10), p.5982-5988

2018

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Dual functionality of cis -regulatory elements as developmental enhancers and Polycomb response elements

Genes & development, 2017-03, Vol.31 (6), p.590-602

2017

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A core transcriptional network for early mesoderm development in Drosophila melanogaster

Genes & development, 2007-02, Vol.21 (4), p.436-449

2007

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Dynamic Regulation by Polycomb Group Protein Complexes Controls Pattern Formation and the Cell Cycle in Drosophila

Developmental cell, 2008-12, Vol.15 (6), p.877-889

2008

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Model-based method for transcription factor target identification with limited data

Proceedings of the National Academy of Sciences - PNAS, 2010-04, Vol.107 (17), p.7793-7798

2010

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Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

PLoS genetics, 2014-01, Vol.10 (1), p.e1004060-e1004060

2014

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A conserved role for Snail as a potentiator of active transcription

Genes & development, 2014-01, Vol.28 (2), p.167-181

2014

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A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

Developmental cell, 2006-06, Vol.10 (6), p.797-807

2006

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Automated sorting of live transgenic embryos

Nature biotechnology, 2001-02, Vol.19 (2), p.153-156

2001

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Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Genome research, 2013-03, Vol.23 (3), p.568-579

2013

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Gene Expression during the Life Cycle of Drosophila melanogaster

Science (American Association for the Advancement of Science), 2002-09, Vol.297 (5590), p.2270-2275

2002

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Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila

Methods in molecular biology (Clifton, N.J.), 2016-01, Vol.1478, p.263

2016

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Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

PLoS computational biology, 2012-12, Vol.8 (12), p.e1002798-e1002798

2012

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A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling as Essential Regulators of Muscle Development

Developmental cell, 2009-02, Vol.16 (2), p.280-291

2009

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Developmental enhancers and chromosome topology

Science (American Association for the Advancement of Science), 2018-09, Vol.361 (6409), p.1341-1345

2018

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Next-generation sequencing-based detection of germline L1-mediated transductions

BMC genomics, 2016-05, Vol.17 (326), p.342-342, Article 342

2016

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A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

Transcription factors: from enhancer binding to developmental control

Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression

Enhancer loops appear stable during development and are associated with paused polymerase

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

cis -Regulatory networks during development: a view of Drosophila

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

A Versatile, Low-Cost, Multiway Microfluidic Sorter for Droplets, Cells, and Embryos

Dual functionality of cis -regulatory elements as developmental enhancers and Polycomb response elements

A core transcriptional network for early mesoderm development in Drosophila melanogaster

Dynamic Regulation by Polycomb Group Protein Complexes Controls Pattern Formation and the Cell Cycle in Drosophila

Model-based method for transcription factor target identification with limited data

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity

A conserved role for Snail as a potentiator of active transcription

A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

Automated sorting of live transgenic embryos

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing

Gene Expression during the Life Cycle of Drosophila melanogaster

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila

Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling as Essential Regulators of Muscle Development

Developmental enhancers and chromosome topology

Next-generation sequencing-based detection of germline L1-mediated transductions

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