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Omics in Plant Breeding

Aluízio Borém, Roberto Fritsche-Neto, Aluízio Borém, Roberto Fritsche-Neto

1, 2014

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Optimizing quantitative trait loci introgression in elite rice germplasms: Comparing methods and population sizes to develop new recipients via stochastic simulations

Plant breeding, 2023-08, Vol.142 (4), p.439-448

2023

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SoilType: An R package to interplay soil characterization in plant science

Agronomy journal, 2024-05, Vol.116 (3), p.848-854

Fritsche‐Neto, Roberto

2024

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Genomic Prediction of Autogamous and Allogamous Plants by SNPs and Haplotypes

Crop science, 2017-11, Vol.57 (6), p.2951-2958

2017

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Adoption Trend of Climate-Resilient Rice Varieties in Bangladesh

Sustainability, 2022-05, Vol.14 (9), p.5156

2022

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Enviromic Assembly Increases Accuracy and Reduces Costs of the Genomic Prediction for Yield Plasticity in Maize

Frontiers in plant science, 2021-10, Vol.12, p.717552-717552

2021

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Using public databases for genomic prediction of tropical maize lines

Plant breeding, 2020-08, Vol.139 (4), p.697-707

2020

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A low‐cost greenhouse‐based high‐throughput phenotyping platform for genetic studies: A case study in maize under inoculation with plant growth‐promoting bacteria

Plant phenome journal, 2022, Vol.5 (1), p.n/a

2022

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Classification of plant growth‐promoting bacteria inoculation status and prediction of growth‐related traits in tropical maize using hyperspectral image and genomic data

Crop science, 2023-01, Vol.63 (1), p.88-100

2023

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Genome‐wide association analysis of hyperspectral reflectance data to dissect the genetic architecture of growth‐related traits in maize under plant growth‐promoting bacteria inoculation

Plant direct, 2023-04, Vol.7 (4), p.e492-n/a

2023

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EnvRtype: a software to interplay enviromics and quantitative genomics in agriculture

G3 : genes - genomes - genetics, 2021-04, Vol.11 (4)

2021

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The accuracy of different strategies for building training sets for genomic predictions in segregating soybean populations

Crop science, 2020-11, Vol.60 (6), p.3115-3126

2020

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Genetic Vulnerability and the Relationship of Commercial Germplasms of Maize in Brazil with the Nested Association Mapping Parents

PloS one, 2016-10, Vol.11 (10), p.e0163739-e0163739

2016

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The Modern Plant Breeding Triangle: Optimizing the Use of Genomics, Phenomics, and Enviromics Data

Frontiers in plant science, 2021-04, Vol.12, p.651480-651480

2021

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GGE Biplot projection in discriminating the efficiency of popcorn lines to use nitrogen

Ciência e agrotecnologia, 2017-02, Vol.41 (1), p.22-31

2017

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Multi-objective optimized genomic breeding strategies for sustainable food improvement

Heredity, 2019-05, Vol.122 (5), p.672-683

2019

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Elite germplasm introduction, training set composition, and genetic optimization algorithms effect on genomic selection‐based breeding programs

Crop science, 2024-10

2024

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Improving the identification of haploid maize seeds using convolutional neural networks

Crop science, 2021-07, Vol.61 (4), p.2387-2397

2021

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Expected Genotype Quality and Diploidized Marker Data from Genotyping‐by‐Sequencing of Urochloa spp. Tetraploids

The plant genome, 2019-11, Vol.12 (3), p.1-9

2019

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Optimizing multi-environment trials in the Southern US Rice belt via smart-climate-soil prediction-based models and economic importance

Frontiers in plant science, 2024-10, Vol.15, p.1458701

2024

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On the usefulness of parental lines GWAS for predicting low heritability traits in tropical maize hybrids

PloS one, 2020-02, Vol.15 (2), p.e0228724-e0228724

2020

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Realized genetic gains via recurrent selection in a tropical maize haploid inducer population and optimizing simultaneous selection for the next cycles

Crop science, 2023-09, Vol.63 (5), p.2865-2876

2023

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snpReady: a tool to assist breeders in genomic analysis

Molecular breeding, 2018-08, Vol.38 (8), p.1-7, Article 102

2018

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EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses

PloS one, 2020-04, Vol.15 (4), p.e0232110-e0232110

2020

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Phenotypic plasticity and genetic trends in the past 30 years of sugarcane genetic improvement in Louisiana

Crop science, 2024-01, Vol.64 (1), p.44-54

2024

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Omics in Plant Breeding

Optimizing quantitative trait loci introgression in elite rice germplasms: Comparing methods and population sizes to develop new recipients via stochastic simulations

SoilType: An R package to interplay soil characterization in plant science

Genomic Prediction of Autogamous and Allogamous Plants by SNPs and Haplotypes

Adoption Trend of Climate-Resilient Rice Varieties in Bangladesh

Enviromic Assembly Increases Accuracy and Reduces Costs of the Genomic Prediction for Yield Plasticity in Maize

Using public databases for genomic prediction of tropical maize lines

A low‐cost greenhouse‐based high‐throughput phenotyping platform for genetic studies: A case study in maize under inoculation with plant growth‐promoting bacteria

Classification of plant growth‐promoting bacteria inoculation status and prediction of growth‐related traits in tropical maize using hyperspectral image and genomic data

Genome‐wide association analysis of hyperspectral reflectance data to dissect the genetic architecture of growth‐related traits in maize under plant growth‐promoting bacteria inoculation

EnvRtype: a software to interplay enviromics and quantitative genomics in agriculture

The accuracy of different strategies for building training sets for genomic predictions in segregating soybean populations

Genetic Vulnerability and the Relationship of Commercial Germplasms of Maize in Brazil with the Nested Association Mapping Parents

The Modern Plant Breeding Triangle: Optimizing the Use of Genomics, Phenomics, and Enviromics Data

GGE Biplot projection in discriminating the efficiency of popcorn lines to use nitrogen

Multi-objective optimized genomic breeding strategies for sustainable food improvement

Elite germplasm introduction, training set composition, and genetic optimization algorithms effect on genomic selection‐based breeding programs

Improving the identification of haploid maize seeds using convolutional neural networks

Expected Genotype Quality and Diploidized Marker Data from Genotyping‐by‐Sequencing of Urochloa spp. Tetraploids

Optimizing multi-environment trials in the Southern US Rice belt via smart-climate-soil prediction-based models and economic importance

On the usefulness of parental lines GWAS for predicting low heritability traits in tropical maize hybrids

Realized genetic gains via recurrent selection in a tropical maize haploid inducer population and optimizing simultaneous selection for the next cycles

snpReady: a tool to assist breeders in genomic analysis

EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses

Phenotypic plasticity and genetic trends in the past 30 years of sugarcane genetic improvement in Louisiana

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