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Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

Nature reviews. Genetics, 2014-01, Vol.15 (1), p.49-55

2014

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Strain inheritance and neonatal gut microbiota development: A meta-analysis

International journal of medical microbiology, 2021-04, Vol.311 (3), p.151483-151483, Article 151483

2021

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Human Microbiota Characterization in the Course of Renal Transplantation

American journal of transplantation, 2014-02, Vol.14 (2), p.416-427

2014

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Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species

PLoS pathogens, 2012-08, Vol.8 (8), p.e1002837-e1002837

2012

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Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants

PloS one, 2012-03, Vol.7 (3), p.e33387

2012

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What is new and relevant for sequencing-based microbiome research? A mini-review

Journal of advanced research, 2019-09, Vol.19, p.105-112

2019

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CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing

BMC bioinformatics, 2011-08, Vol.12 (1), p.356-356, Article 356

2011

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Colonization patterns of soil microbial communities in the Atacama Desert

Microbiome, 2013-11, Vol.1 (1), p.28-28, Article 28

2013

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Comparative Genomics of the IncA/C Multidrug Resistance Plasmid Family

Journal of Bacteriology, 2009-08, Vol.191 (15), p.4750-4757

2009

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Microbiome or no microbiome: are we looking at the prenatal environment through the right lens?

Microbiome, 2021-01, Vol.9 (1), p.9-9, Article 9

2021

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The More the Merrier? Reduced Fecal Microbiota Diversity in Preterm Infants Treated with Antibiotics

The Journal of pediatrics, 2014-07, Vol.165 (1), p.8-10

Fricke, W. Florian, PhD

2014

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Whole-Genome Sequences of Bacillus subtilis and Close Relatives

Journal of Bacteriology, 2012-05, Vol.194 (9), p.2378-2379

2012

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Fatigue Analysis of Welded Components: Designer's Guide to the Structural Hot-Spot Stress Approach

1, 2006

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Microbiota dynamics in patients treated with fecal microbiota transplantation for recurrent Clostridium difficile infection

PloS one, 2013-11, Vol.8 (11), p.e81330-e81330

2013

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Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection

Scientific reports, 2020-08, Vol.10 (1), p.13828-13828, Article 13828

2020

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genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features

Proceedings of the National Academy of Sciences - PNAS, 2008-02, Vol.105 (6), p.2128-2133

2008

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The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

Journal of Bacteriology, 2008-10, Vol.190 (20), p.6881-6893

2008

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Notch stress concepts for the fatigue assessment of welded joints – Background and applications

International journal of fatigue, 2012, Vol.34 (1), p.2-16

2012

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Herr Ober, da sind Bakterien im Wein

Biospektrum, 2020-11, Vol.26 (7), p.809-810

2020

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Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198

Microbial genomics, 2019-07, Vol.5 (7)

2019

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More data needed on neonatal microbiome seeding

Microbiome, 2022-06, Vol.10 (1), p.88-88, Article 88

2022

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Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis

Proceedings of the National Academy of Sciences - PNAS, 2011-12, Vol.108 (51), p.E1423-E1432

2011

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Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation

Microbiome, 2022-03, Vol.10 (1), p.53-15, Article 53

2022

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Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota

The ISME Journal, 2013-07, Vol.7 (7), p.1354-1366

2013

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Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-Mediated Adaptive Sublineage Evolution

Journal of Bacteriology, 2011-07, Vol.193 (14), p.3556-3568

2011

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Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

Strain inheritance and neonatal gut microbiota development: A meta-analysis

Human Microbiota Characterization in the Course of Renal Transplantation

Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species

Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants

What is new and relevant for sequencing-based microbiome research? A mini-review

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing

Colonization patterns of soil microbial communities in the Atacama Desert

Comparative Genomics of the IncA/C Multidrug Resistance Plasmid Family

Microbiome or no microbiome: are we looking at the prenatal environment through the right lens?

The More the Merrier? Reduced Fecal Microbiota Diversity in Preterm Infants Treated with Antibiotics

Whole-Genome Sequences of Bacillus subtilis and Close Relatives

Fatigue Analysis of Welded Components: Designer's Guide to the Structural Hot-Spot Stress Approach

Microbiota dynamics in patients treated with fecal microbiota transplantation for recurrent Clostridium difficile infection

Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection

genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

Notch stress concepts for the fatigue assessment of welded joints – Background and applications

Herr Ober, da sind Bakterien im Wein

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198

More data needed on neonatal microbiome seeding

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis

Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation

Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota

Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-Mediated Adaptive Sublineage Evolution

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