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Can changes in 3D genome architecture create new regulatory landscapes that contribute to phenotypic evolution?

Essays in biochemistry, 2022-12, Vol.66 (6), p.745-752

2022

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Multiple layers of complexity in cis-regulatory regions of developmental genes

Developmental dynamics, 2012-12, Vol.241 (12), p.1857-1866

Frankel, Nicolás

2012

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Pleiotropic Enhancers are Ubiquitous Regulatory Elements in the Human Genome

Genome biology and evolution, 2022-05, Vol.14 (6)

2022

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Genetic and Transgenic Reagents for Drosophila simulans , D. mauritiana , D. yakuba , D. santomea , and D. virilis

G3 : genes - genomes - genetics, 2017-04, Vol.7 (4), p.1339-1347

2017

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Actors with Multiple Roles: Pleiotropic Enhancers and the Paradigm of Enhancer Modularity

Trends in genetics, 2019-06, Vol.35 (6), p.423-433

2019

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Phenotypic robustness conferred by apparently redundant transcriptional enhancers

Nature, 2010-07, Vol.466 (7305), p.490-493

2010

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Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness

Cell, 2015-01, Vol.160 (1-2), p.191-203

2015

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The structure and evolution of cis-regulatory regions: the shavenbaby story

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2013-12, Vol.368 (1632), p.20130028

2013

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A complex gene regulatory architecture underlies the development and evolution of cuticle morphology in Drosophila

Current opinion in genetics & development, 2021-08, Vol.69, p.21-27

2021

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Morphological evolution caused by many subtle-effect substitutions in regulatory DNA

Nature (London), 2011-06, Vol.474 (7353), p.598-603

2011

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Phylogenomics provides insights into the evolution of cactophily and host plant shifts in Drosophila

Molecular phylogenetics and evolution, 2023-01, Vol.178, p.107653-107653, Article 107653

2023

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Conserved regulatory architecture underlies parallel genetic changes and convergent phenotypic evolution

Proceedings of the National Academy of Sciences - PNAS, 2012-12, Vol.109 (51), p.20975-20979

2012

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TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome

Molecular biology and evolution, 2024-08, Vol.41 (8)

2024

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Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function

Cell reports (Cambridge), 2018-03, Vol.22 (11), p.3021-3031

2018

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Unraveling the ecological processes modulating the population structure of Escherichia coli in a highly polluted urban stream network

Scientific reports, 2021-07, Vol.11 (1), p.14679-14, Article 14679

2021

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Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution

PLoS genetics, 2018-05, Vol.14 (5), p.e1007375-e1007375

2018

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The Density of Regulatory Information Is a Major Determinant of Evolutionary Constraint on Noncoding DNA in Drosophila

Molecular biology and evolution, 2024-02, Vol.41 (2)

2024

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Cis-regulatory variation in the shavenbaby gene underlies intraspecific phenotypic variation, mirroring interspecific divergence in the same trait

Evolution, 2021-02, Vol.75 (2), p.427-436

2021

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Evolving Genital Structures: A Deep Look at Network Co-option

Developmental cell, 2015-09, Vol.34 (5), p.485-486

2015

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Parental age influences developmental stability of the progeny in Drosophila

Proceedings of the Royal Society. B, Biological sciences, 2015-03, Vol.282 (1803), p.20142437-20142437

2015

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Evolutionary history of the Asr gene family

Gene, 2006-08, Vol.378, p.74-83

2006

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ASR1 Mediates Glucose-Hormone Cross Talk by Affecting Sugar Trafficking in Tobacco Plants

Plant physiology (Bethesda), 2013-03, Vol.161 (3), p.1486-1500

2013

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ci21A/Asr1 expression influences glucose accumulation in potato tubers

Plant molecular biology, 2007-03, Vol.63 (5), p.719-730

2007

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Dimerization and DNA-binding of ASR1, a small hydrophilic protein abundant in plant tissues suffering from water loss

Biochemical and biophysical research communications, 2007-01, Vol.352 (4), p.831-835

2007

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Nucleotide polymorphism in the drought responsive gene Asr2 in wild populations of tomato

Genetica, 2009-05, Vol.136 (1), p.13-25

2009

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Can changes in 3D genome architecture create new regulatory landscapes that contribute to phenotypic evolution?

Multiple layers of complexity in cis-regulatory regions of developmental genes

Pleiotropic Enhancers are Ubiquitous Regulatory Elements in the Human Genome

Genetic and Transgenic Reagents for Drosophila simulans , D. mauritiana , D. yakuba , D. santomea , and D. virilis

Actors with Multiple Roles: Pleiotropic Enhancers and the Paradigm of Enhancer Modularity

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness

The structure and evolution of cis-regulatory regions: the shavenbaby story

A complex gene regulatory architecture underlies the development and evolution of cuticle morphology in Drosophila

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA

Phylogenomics provides insights into the evolution of cactophily and host plant shifts in Drosophila

Conserved regulatory architecture underlies parallel genetic changes and convergent phenotypic evolution

TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome

Comprehensive Analysis of a cis-Regulatory Region Reveals Pleiotropy in Enhancer Function

Unraveling the ecological processes modulating the population structure of Escherichia coli in a highly polluted urban stream network

Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution

The Density of Regulatory Information Is a Major Determinant of Evolutionary Constraint on Noncoding DNA in Drosophila

Cis-regulatory variation in the shavenbaby gene underlies intraspecific phenotypic variation, mirroring interspecific divergence in the same trait

Evolving Genital Structures: A Deep Look at Network Co-option

Parental age influences developmental stability of the progeny in Drosophila

Evolutionary history of the Asr gene family

ASR1 Mediates Glucose-Hormone Cross Talk by Affecting Sugar Trafficking in Tobacco Plants

ci21A/Asr1 expression influences glucose accumulation in potato tubers

Dimerization and DNA-binding of ASR1, a small hydrophilic protein abundant in plant tissues suffering from water loss

Nucleotide polymorphism in the drought responsive gene Asr2 in wild populations of tomato

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