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Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces

Science (American Association for the Advancement of Science), 2015-06, Vol.348 (6241), p.1365-1368

2015

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The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

Journal of chemical theory and computation, 2017-06, Vol.13 (6), p.3031-3048

2017

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Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking

Journal of chemical theory and computation, 2021-03, Vol.17 (3), p.2000-2010

2021

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EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy

Nature methods, 2015-10, Vol.12 (10), p.943-946

2015

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Near-atomic model of microtubule-tau interactions

Science (American Association for the Advancement of Science), 2018-06, Vol.360 (6394), p.1242-1246

2018

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Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy

Nature structural & molecular biology, 2016-10, Vol.23 (10), p.899-905

2016

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Protein structure prediction using Rosetta in CASP12

Proteins, structure, function, and bioinformatics, 2018-03, Vol.86 (S1), p.113-121

2018

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Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules

Journal of chemical theory and computation, 2016-12, Vol.12 (12), p.6201-6212

2016

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Relaxation of backbone bond geometry improves protein energy landscape modeling

Protein science, 2014-01, Vol.23 (1), p.47-55

2014

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Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination

PLoS computational biology, 2020-09, Vol.16 (9), p.e1008103-e1008103

2020

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Improving de novo protein binder design with deep learning

Nature communications, 2023-05, Vol.14 (1), p.2625-9, Article 2625

2023

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Cryo-electron microscopy structure of the lipid droplet-formation protein seipin

The Journal of cell biology, 2018-12, Vol.217 (12), p.4080-4091

2018

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Protein homology model refinement by large-scale energy optimization

Proceedings of the National Academy of Sciences - PNAS, 2018-03, Vol.115 (12), p.3054-3059

2018

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Structural basis for the initiation of eukaryotic transcription-coupled DNA repair

Nature (London), 2017-11, Vol.551 (7682), p.653-657

2017

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Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps

Nature communications, 2023-03, Vol.14 (1), p.1164-10, Article 1164

2023

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Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

eLife, 2016-09, Vol.5

2016

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Phase separation of Polo-like kinase 4 by autoactivation and clustering drives centriole biogenesis

Nature communications, 2019-10, Vol.10 (1), p.4959-19, Article 4959

2019

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High thermodynamic stability of parametrically designed helical bundles

Science (American Association for the Advancement of Science), 2014-10, Vol.346 (6208), p.481-485

2014

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Structure of the Type VI Secretion System Contractile Sheath

Cell, 2015-02, Vol.160 (5), p.952-962

2015

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A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms

Cell, 2020-10, Vol.183 (3), p.802-817.e24

2020

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Cryo‐EM model validation using independent map reconstructions

Protein science, 2013-06, Vol.22 (6), p.865-868

2013

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Modeling symmetric macromolecular structures in Rosetta3

PloS one, 2011-06, Vol.6 (6), p.e20450-e20450

2011

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Crystal structure of a monomeric retroviral protease solved by protein folding game players

Nature structural & molecular biology, 2011-10, Vol.18 (10), p.1175-1177

2011

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Discovery and Characterization of Spike N‐Terminal Domain‐Binding Aptamers for Rapid SARS‐CoV‐2 Detection

Angewandte Chemie International Edition, 2021-09, Vol.60 (39), p.21211-21215

International ed. in English, 2021

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Electromechanical coupling mechanism for activation and inactivation of an HCN channel

Nature communications, 2021-05, Vol.12 (1), p.2802-2802, Article 2802

2021

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Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy

Near-atomic model of microtubule-tau interactions

Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy

Protein structure prediction using Rosetta in CASP12

Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules

Relaxation of backbone bond geometry improves protein energy landscape modeling

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination

Improving de novo protein binder design with deep learning

Cryo-electron microscopy structure of the lipid droplet-formation protein seipin

Protein homology model refinement by large-scale energy optimization

Structural basis for the initiation of eukaryotic transcription-coupled DNA repair

Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

Phase separation of Polo-like kinase 4 by autoactivation and clustering drives centriole biogenesis

High thermodynamic stability of parametrically designed helical bundles

Structure of the Type VI Secretion System Contractile Sheath

A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms

Cryo‐EM model validation using independent map reconstructions

Modeling symmetric macromolecular structures in Rosetta3

Crystal structure of a monomeric retroviral protease solved by protein folding game players

Discovery and Characterization of Spike N‐Terminal Domain‐Binding Aptamers for Rapid SARS‐CoV‐2 Detection

Electromechanical coupling mechanism for activation and inactivation of an HCN channel

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