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Effects of cytosine methylation on transcription factor binding sites

BMC genomics, 2014-03, Vol.15 (1), p.119-119, Article 119

2014

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Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

Molecular systems biology, 2015-12, Vol.11 (12), p.852-n/a

2015

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The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

Genome biology, 2009-01, Vol.10 (4), p.R40-R40

2009

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FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

Genome biology, 2009-01, Vol.10 (4), p.R39-R39

2009

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CAGE-defined promoter regions of the genes implicated in Rett Syndrome

BMC genomics, 2014-12, Vol.15 (1), p.1177-1177, Article 1177

2014

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PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases

BMC bioinformatics, 2006-02, Vol.7 (1), p.82-82, Article 82

2006

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RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

BMC genomics, 2014-04, Vol.15 (1), p.269-269, Article 269

2014

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The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition

Genome biology, 2008-01, Vol.9 (8), p.R127-R127

2008

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Functional validation of variants of unknown significance using CRISPR gene editing and transcriptomics: A Kleefstra syndrome case study

Gene, 2022-05, Vol.821, p.146287-146287, Article 146287

2022

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Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules

BMC genomics, 2014-08, Vol.15 (1), p.729-729, Article 729

2014

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A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

Genome Biology, 2014-07, Vol.15 (7), p.413-413, Article 413

2014

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Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

BMC genomics, 2014-03, Vol.15 (1), p.120-120

2014

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Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis

Genome biology, 2009-01, Vol.10 (11), p.R121-R121

2009

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Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

Genome biology, 2006-01, Vol.7 (1), p.R5-R5

2006

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Long non―coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

Nature (London), 2012-11, Vol.491 (7424), p.454-457

2012

Volltextzugriff (PDF)

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

Nucleic acids research, 2015-04, Vol.43 (8), p.e51

2015

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Unamplified cap analysis of gene expression on a single-molecule sequencer

Genome research, 2011-07, Vol.21 (7), p.1150

2011

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Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Genome research, 2014-04, Vol.24 (4), p.708

2014

Volltextzugriff (PDF)

The statistical geometry of transcriptome divergence in cell-type evolution and cancer

Nature communications, 2015-01, Vol.6 (1), p.6066-6066, Article 6066

2015

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Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC

Molecular cancer research, 2017-10, Vol.15 (10), p.1354-1365

2017

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An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

Cell, 2010-03, Vol.140 (5), p.744-752

2010

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Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

Nucleic acids research, 2016-04, Vol.44 (7), p.3233

2016

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Reinforcing the association between distal 1q CNVs and structural brain disorder: A case of a complex 1q43-q44 CNV and a review of the literature

American journal of medical genetics. Part B, Neuropsychiatric genetics, 2016-04, Vol.171B (3), p.458-467

2016

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Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells

Journal of leukocyte biology, 2015-05, Vol.97 (5), p.985-995

2015

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Gateways to the FANTOM5 promoter level mammalian expression atlas

Effects of cytosine methylation on transcription factor binding sites

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

CAGE-defined promoter regions of the genes implicated in Rett Syndrome

PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition

Functional validation of variants of unknown significance using CRISPR gene editing and transcriptomics: A Kleefstra syndrome case study

Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

Long non―coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

Unamplified cap analysis of gene expression on a single-molecule sequencer

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

The statistical geometry of transcriptome divergence in cell-type evolution and cancer

Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

Reinforcing the association between distal 1q CNVs and structural brain disorder: A case of a complex 1q43-q44 CNV and a review of the literature

Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells

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