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Ten Simple Rules for Taking Advantage of Git and GitHub

PLoS computational biology, 2016-07, Vol.12 (7), p.e1004947-e1004947

2016

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Hepatic kinome atlas: An in‐depth identification of kinase pathways in liver fibrosis of humans and rodents

Hepatology (Baltimore, Md.), 2022-11, Vol.76 (5), p.1376-1388

2022

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Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation

PloS one, 2015-08, Vol.10 (8), p.e0135410-e0135410

2015

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Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors

Nature communications, 2023-01, Vol.14 (1), p.336-18, Article 336

2023

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Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer

Oncotarget, 2018-05, Vol.9 (37), p.24787-24800

2018

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Advances in gene ontology utilization improve statistical power of annotation enrichment

PloS one, 2019-08, Vol.14 (8), p.e0220728-e0220728

2019

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Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue

Metabolites, 2021-10, Vol.11 (11), p.740

2021

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Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments

Metabolites, 2022-06, Vol.12 (6), p.515

2022

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Cellular Origins of EGFR‐Driven Lung Cancer Cells Determine Sensitivity to Therapy

Advanced science, 2021-11, Vol.8 (22), p.e2101999-n/a

2021

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Deriving Lipid Classification Based on Molecular Formulas

Metabolites, 2020-03, Vol.10 (3), p.122

2020

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Bilirubin Nanoparticle Treatment in Obese Mice Inhibits Hepatic Ceramide Production and Remodels Liver Fat Content

Metabolites, 2023-02, Vol.13 (2), p.215

2023

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Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC

Cancer informatics, 2019, Vol.18, p.1176935119843507

2019

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A nutrigenomic analysis of intestinal response to partial soybean meal replacement in diets for juvenile Atlantic halibut, Hippoglossus hippoglossus, L

Aquaculture, 2010-01, Vol.298 (3), p.282-293

2010

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AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities

BMC bioinformatics, 2012-09, Vol.13 (1), p.229-229, Article 229

2012

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Dataset for dose and time-dependent transcriptional response to ionizing radiation exposure

Data in brief, 2019-12, Vol.27, p.104624, Article 104624

2019

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A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets

Metabolites, 2013-09, Vol.3 (4), p.853-866

2013

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Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra

Analytical chemistry (Washington), 2019-07, Vol.91 (14), p.8933-8940

2019

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Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retinal pigment epithelium

Biochimica et biophysica acta. Molecular basis of disease, 2020-10, Vol.1866 (10), p.165883, Article 165883

2020

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Transcriptional profile of immediate response to ionizing radiation exposure

Genomics data, 2016-03, Vol.7, p.82-85

2016

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A less-biased analysis of metalloproteins reveals novel zinc coordination geometries

Proteins, structure, function, and bioinformatics, 2015-08, Vol.83 (8), p.1470-1487

2015

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Aberrant coordination geometries discovered in the most abundant metalloproteins

Proteins, structure, function, and bioinformatics, 2017-05, Vol.85 (5), p.885-907

2017

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Perspectives and expectations in structural bioinformatics of metalloproteins

Proteins, structure, function, and bioinformatics, 2017-05, Vol.85 (5), p.938-944

2017

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Coordination characterization of zinc metalloproteins

BMC bioinformatics, 2014-09, Vol.15 (S10), p.P31-P31, Article P31

2014

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New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis

Metabolomics, 2018-10, Vol.14 (10), p.125-11, Article 125

2018

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An introduction to DNA microarrays for gene expression analysis

Chemometrics and intelligent laboratory systems, 2010-11, Vol.104 (1), p.28-52

2010

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Ten Simple Rules for Taking Advantage of Git and GitHub

Hepatic kinome atlas: An in‐depth identification of kinase pathways in liver fibrosis of humans and rodents

Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation

Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors

Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer

Advances in gene ontology utilization improve statistical power of annotation enrichment

Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue

Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments

Cellular Origins of EGFR‐Driven Lung Cancer Cells Determine Sensitivity to Therapy

Deriving Lipid Classification Based on Molecular Formulas

Bilirubin Nanoparticle Treatment in Obese Mice Inhibits Hepatic Ceramide Production and Remodels Liver Fat Content

Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC

A nutrigenomic analysis of intestinal response to partial soybean meal replacement in diets for juvenile Atlantic halibut, Hippoglossus hippoglossus, L

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities

Dataset for dose and time-dependent transcriptional response to ionizing radiation exposure

A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets

Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra

Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retinal pigment epithelium

Transcriptional profile of immediate response to ionizing radiation exposure

A less-biased analysis of metalloproteins reveals novel zinc coordination geometries

Aberrant coordination geometries discovered in the most abundant metalloproteins

Perspectives and expectations in structural bioinformatics of metalloproteins

Coordination characterization of zinc metalloproteins

New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis

An introduction to DNA microarrays for gene expression analysis

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