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Ten Simple Rules for Taking Advantage of Git and GitHub

PLoS computational biology, 2016-07, Vol.12 (7), p.e1004947-e1004947

2016

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Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation

PloS one, 2015-08, Vol.10 (8), p.e0135410-e0135410

2015

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Advances in gene ontology utilization improve statistical power of annotation enrichment

PloS one, 2019-08, Vol.14 (8), p.e0220728-e0220728

2019

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Hepatic kinome atlas: An in‐depth identification of kinase pathways in liver fibrosis of humans and rodents

Hepatology (Baltimore, Md.), 2022-11, Vol.76 (5), p.1376-1388

2022

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Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors

Nature communications, 2023-01, Vol.14 (1), p.336-18, Article 336

2023

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Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer

Oncotarget, 2018-05, Vol.9 (37), p.24787-24800

2018

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Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue

Metabolites, 2021-10, Vol.11 (11), p.740

2021

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Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra

Analytical chemistry (Washington), 2019-07, Vol.91 (14), p.8933-8940

2019

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Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retinal pigment epithelium

Biochimica et biophysica acta. Molecular basis of disease, 2020-10, Vol.1866 (10), p.165883, Article 165883

2020

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Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments

Metabolites, 2022-06, Vol.12 (6), p.515

2022

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Cellular Origins of EGFR‐Driven Lung Cancer Cells Determine Sensitivity to Therapy

Advanced science, 2021-11, Vol.8 (22), p.e2101999-n/a

2021

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A less-biased analysis of metalloproteins reveals novel zinc coordination geometries

Proteins, structure, function, and bioinformatics, 2015-08, Vol.83 (8), p.1470-1487

2015

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Bilirubin Nanoparticle Treatment in Obese Mice Inhibits Hepatic Ceramide Production and Remodels Liver Fat Content

Metabolites, 2023-02, Vol.13 (2), p.215

2023

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Aberrant coordination geometries discovered in the most abundant metalloproteins

Proteins, structure, function, and bioinformatics, 2017-05, Vol.85 (5), p.885-907

2017

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Deriving Lipid Classification Based on Molecular Formulas

Metabolites, 2020-03, Vol.10 (3), p.122

2020

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Perspectives and expectations in structural bioinformatics of metalloproteins

Proteins, structure, function, and bioinformatics, 2017-05, Vol.85 (5), p.938-944

2017

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Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC

Cancer informatics, 2019, Vol.18, p.1176935119843507

2019

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AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities

BMC bioinformatics, 2012-09, Vol.13 (1), p.229-229, Article 229

2012

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A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets

Metabolites, 2013-09, Vol.3 (4), p.853-866

2013

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Coordination characterization of zinc metalloproteins

BMC bioinformatics, 2014-09, Vol.15 (S10), p.P31-P31, Article P31

2014

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A nutrigenomic analysis of intestinal response to partial soybean meal replacement in diets for juvenile Atlantic halibut, Hippoglossus hippoglossus, L

Aquaculture, 2010-01, Vol.298 (3), p.282-293

2010

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An introduction to DNA microarrays for gene expression analysis

Chemometrics and intelligent laboratory systems, 2010-11, Vol.104 (1), p.28-52

2010

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New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis

Metabolomics, 2018-10, Vol.14 (10), p.125-11, Article 125

2018

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Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012

BMC bioinformatics, 2012-07, Vol.13 (S12), p.A1-A1, Article A1

2012

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Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011

BMC bioinformatics, 2011-08, Vol.12 Suppl 7 (S7), p.A1-A1, Article A1

2011

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Ten Simple Rules for Taking Advantage of Git and GitHub

Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation

Advances in gene ontology utilization improve statistical power of annotation enrichment

Hepatic kinome atlas: An in‐depth identification of kinase pathways in liver fibrosis of humans and rodents

Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors

Preclinical evaluation of novel fatty acid synthase inhibitors in primary colorectal cancer cells and a patient-derived xenograft model of colorectal cancer

Untargeted Lipidomics of Non-Small Cell Lung Carcinoma Demonstrates Differentially Abundant Lipid Classes in Cancer vs. Non-Cancer Tissue

Small Molecule Isotope Resolved Formula Enumeration: A Methodology for Assigning Isotopologues and Metabolite Formulas in Fourier Transform Mass Spectra

Loss of CLN3, the gene mutated in juvenile neuronal ceroid lipofuscinosis, leads to metabolic impairment and autophagy induction in retinal pigment epithelium

Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Injection Fourier Transform Mass Spectrometry Experiments

Cellular Origins of EGFR‐Driven Lung Cancer Cells Determine Sensitivity to Therapy

A less-biased analysis of metalloproteins reveals novel zinc coordination geometries

Bilirubin Nanoparticle Treatment in Obese Mice Inhibits Hepatic Ceramide Production and Remodels Liver Fat Content

Aberrant coordination geometries discovered in the most abundant metalloproteins

Deriving Lipid Classification Based on Molecular Formulas

Perspectives and expectations in structural bioinformatics of metalloproteins

Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities

A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets

Coordination characterization of zinc metalloproteins

A nutrigenomic analysis of intestinal response to partial soybean meal replacement in diets for juvenile Atlantic halibut, Hippoglossus hippoglossus, L

An introduction to DNA microarrays for gene expression analysis

New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis

Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011

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