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Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

Molecular systems biology, 2020-05, Vol.16 (5), p.e8982-n/a

2020

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Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices

Biosensors & bioelectronics, 2015-01, Vol.63, p.218-231

2015

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Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture

Lab on a chip, 2015-06, Vol.15 (11), p.2419-2428

2015

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A systems biology approach to studying the role of microbes in human health

Current opinion in biotechnology, 2013-02, Vol.24 (1), p.4-12

2013

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Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

PLoS computational biology, 2016-11, Vol.12 (11), p.e1004999-e1004999

2016

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Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

PLoS computational biology, 2009-03, Vol.5 (3), p.e1000312-e1000312

2009

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Prediction of intracellular metabolic states from extracellular metabolomic data

Metabolomics, 2015-06, Vol.11 (3), p.603-619

2015

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von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

Bioinformatics, 2011-01, Vol.27 (1), p.142-143

2011

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community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

BMC systems biology, 2011-01, Vol.5 (8), p.8-8, Article 8

2011

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Functional Characterization of Alternate Optimal Solutions of Escherichia coli's Transcriptional and Translational Machinery

Biophysical journal, 2010-05, Vol.98 (10), p.2072-2081

2010

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Robust flux balance analysis of multiscale biochemical reaction networks

BMC bioinformatics, 2013-07, Vol.14 (1), p.240-240, Article 240

2013

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Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2

Journal of cheminformatics, 2014-01, Vol.6 (1), p.2-2, Article 2

2014

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Consistent Estimation of Gibbs Energy Using Component Contributions: e1003098

PLoS computational biology, 2013-07, Vol.9 (7)

2013

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Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization: e1000312

PLoS computational biology, 2009-03, Vol.5 (3)

2009

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Thermodynamically constrained steady state solution space of the E. coli metabolic network

BMC systems biology, 2007-05, Vol.1 (S1), p.P15-P15, Article P15

2007

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Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices

Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture

A systems biology approach to studying the role of microbes in human health

Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

Prediction of intracellular metabolic states from extracellular metabolomic data

von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

Functional Characterization of Alternate Optimal Solutions of Escherichia coli's Transcriptional and Translational Machinery

Robust flux balance analysis of multiscale biochemical reaction networks

Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2

Consistent Estimation of Gibbs Energy Using Component Contributions: e1003098

Do genome‐scale models need exact solvers or clearer standards?

Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization: e1000312

Thermodynamically constrained steady state solution space of the E. coli metabolic network

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