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Proteomics reveals differentially regulated pathways when comparing grade 2 and 4 astrocytomas

PloS one, 2023-11, Vol.18 (11), p.e0290087-e0290087

2023

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Proteomic Analysis of a Rat Streptozotocin Model Shows Dysregulated Biological Pathways Implicated in Alzheimer's Disease

International journal of molecular sciences, 2024-02, Vol.25 (5), p.2772

2024

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Search engine processor: Filtering and organizing peptide spectrum matches

Proteomics (Weinheim), 2012-04, Vol.12 (7), p.944-949

2012

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Intra-Individual Paired Mass Spectrometry Dataset for Decoding Solar-Induced Proteomic Changes in Facial Skin

Scientific data, 2024-05, Vol.11 (1), p.441-441, Article 441

2024

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Simple, efficient and thorough shotgun proteomic analysis with PatternLab V

Nature protocols, 2022-07, Vol.17 (7), p.1553-1578

2022

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Proteogenomic Analysis Reveals Proteins Involved in the First Step of Adipogenesis in Human Adipose-Derived Stem Cells

Stem cells international, 2021-12, Vol.2021, p.3168428-14

2021

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Analyzing marginal cases in differential shotgun proteomics

Bioinformatics, 2011-01, Vol.27 (2), p.275-276

2011

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Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0

Nature protocols, 2016-01, Vol.11 (1), p.102-117

2016

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Proteomics pinpoints alterations in grade I meningiomas of male versus female patients

Scientific reports, 2020-06, Vol.10 (1), p.10335-10335, Article 10335

2020

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Are Gastric Cancer Resection Margin Proteomic Profiles More Similar to Those from Controls or Tumors?

Journal of proteome research, 2012-12, Vol.11 (12), p.5836-5842

2012

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Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins

Nature protocols, 2018-03, Vol.13 (3), p.431-458

2018

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Proteomics reveals that quinoa bioester promotes replenishing effects in epidermal tissue

Scientific reports, 2020-11, Vol.10 (1), p.19392-19392, Article 19392

2020

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Mixed-Data Acquisition: Next-Generation Quantitative Proteomics Data Acquisition

Journal of proteomics, 2020-06, Vol.222, p.103803-103803, Article 103803

2020

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PatternLab for proteomics: a tool for differential shotgun proteomics

BMC bioinformatics, 2008-07, Vol.9 (1), p.316-316, Article 316

2008

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PatternLab: From Mass Spectra to Label‐Free Differential Shotgun Proteomics

Current Protocols in Bioinformatics, 2012-12, Vol.40 (1), p.13.19.1-13.19.18

2012

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A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics

Journal of proteomics, 2019-06, Vol.202, p.103371-103371, Article 103371

2019

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GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data

Proteome science, 2009-02, Vol.7 (1), p.6-6, Article 6

2009

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The impact of blood-processing time on the proteome of human peripheral blood mononuclear cells

Biochimica et biophysica acta. Proteins and proteomics, 2021-03, Vol.1869 (3), p.140581-140581, Article 140581

2021

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Beyond the identifiable proteome: Delving into the proteomics of polymyxin-resistant and non-resistant Acinetobacter baumannii from Brazilian hospitals

Journal of proteomics, 2023-10, Vol.289, p.105012-105012, Article 105012

2023

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Proteome analysis of formalin-fixed paraffin-embedded tissues from a primary gastric melanoma and its meningeal metastasis: a case report

Current topics in medicinal chemistry, 2014-02, Vol.14 (3), p.382-387

2014

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DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters

Journal of proteomics, 2023-04, Vol.277, p.104853-104853, Article 104853

2023

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A scoring model for phosphopeptide site localization and its impact on the question of whether to use MSA

Journal of proteomics, 2015-11, Vol.129, p.42-50

2015

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A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom

Scientific data, 2017-07, Vol.4 (1), p.170090-170090, Article 170090

2017

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PatternLab for proteomics 4.0: A one-stop shop for analyzing shotgun proteomic data

Nature protocols, 2015-12, Vol.11 (1), p.102-117

2015

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Search Engine Processor: filtering and organizing PSMs

Proteomics (Weinheim), 2012-04, Vol.12 (7), p.944-949

2012

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Proteomics reveals differentially regulated pathways when comparing grade 2 and 4 astrocytomas

Proteomic Analysis of a Rat Streptozotocin Model Shows Dysregulated Biological Pathways Implicated in Alzheimer's Disease

Search engine processor: Filtering and organizing peptide spectrum matches

Intra-Individual Paired Mass Spectrometry Dataset for Decoding Solar-Induced Proteomic Changes in Facial Skin

Simple, efficient and thorough shotgun proteomic analysis with PatternLab V

Proteogenomic Analysis Reveals Proteins Involved in the First Step of Adipogenesis in Human Adipose-Derived Stem Cells

Analyzing marginal cases in differential shotgun proteomics

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0

Proteomics pinpoints alterations in grade I meningiomas of male versus female patients

Are Gastric Cancer Resection Margin Proteomic Profiles More Similar to Those from Controls or Tumors?

Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins

Proteomics reveals that quinoa bioester promotes replenishing effects in epidermal tissue

Mixed-Data Acquisition: Next-Generation Quantitative Proteomics Data Acquisition

PatternLab for proteomics: a tool for differential shotgun proteomics

PatternLab: From Mass Spectra to Label‐Free Differential Shotgun Proteomics

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data

The impact of blood-processing time on the proteome of human peripheral blood mononuclear cells

Beyond the identifiable proteome: Delving into the proteomics of polymyxin-resistant and non-resistant Acinetobacter baumannii from Brazilian hospitals

Proteome analysis of formalin-fixed paraffin-embedded tissues from a primary gastric melanoma and its meningeal metastasis: a case report

DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters

A scoring model for phosphopeptide site localization and its impact on the question of whether to use MSA

A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom

PatternLab for proteomics 4.0: A one-stop shop for analyzing shotgun proteomic data

Search Engine Processor: filtering and organizing PSMs

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