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Non-canonical translation in RNA viruses

Journal of general virology, 2012-07, Vol.93 (Pt 7), p.1385-1409

2012

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A hidden gene in astroviruses encodes a viroporin

Nature communications, 2020-08, Vol.11 (1), p.4070-4070, Article 4070

2020

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Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

Nucleic acids research, 2016-09, Vol.44 (15), p.7007

2016

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High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling

PLoS pathogens, 2016-02, Vol.12 (2), p.e1005473-e1005473

2016

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Identification of RNA Virus–Derived RdRp Sequences in Publicly Available Transcriptomic Data Sets

Molecular biology and evolution, 2023-04, Vol.40 (4)

2023

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Manipulation of the unfolded protein response: A pharmacological strategy against coronavirus infection

PLoS pathogens, 2021-06, Vol.17 (6), p.e1009644

2021

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Detection of a fourth orbivirus non-structural protein

PloS one, 2011-10, Vol.6 (10), p.e25697-e25697

2011

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CIAlign: A highly customisable command line tool to clean, interpret and visualise multiple sequence alignments

PeerJ (San Francisco, CA), 2022-03, Vol.10, p.e12983-e12983, Article e12983

2022

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Turnip Mosaic Virus Transcriptional Slippage Dynamics and Distribution in RNA Subpopulations

Molecular plant-microbe interactions, 2022-09, Vol.35 (9), p.835-844

2022

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CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms

Journal of virology, 2020-02, Vol.94 (6)

2020

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Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts

PloS one, 2013-11, Vol.8 (11), p.e80720-e80720

2013

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New insights into flavivirus evolution, taxonomy and biogeographic history, extended by analysis of canonical and alternative coding sequences

PloS one, 2015-02, Vol.10 (2), p.e0117849-e0117849

2015

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Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution

Virology (New York, N.Y.), 2021-06, Vol.558, p.145-151

2021

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An RNA thermoswitch regulates daytime growth in Arabidopsis

Nature plants, 2020-05, Vol.6 (5), p.522-532

2020

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overlapping essential gene in the Potyviridae

Proceedings of the National Academy of Sciences - PNAS, 2008-04, Vol.105 (15), p.5897-5902

2008

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Discovery of a Small Non-AUG-Initiated ORF in Poleroviruses and Luteoviruses That Is Required for Long-Distance Movement

PLoS pathogens, 2015-05, Vol.11 (5), p.e1004868-e1004868

2015

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Protein-directed ribosomal frameshifting temporally regulates gene expression

Nature communications, 2017-06, Vol.8 (1), p.15582-15582, Article 15582

2017

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Avoidance of reporter assay distortions from fused dual reporters

RNA (Cambridge), 2017-08, Vol.23 (8), p.1285-1289

2017

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Efficient −2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein

Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (43), p.E2920-E2928

2012

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Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

Nature communications, 2021-12, Vol.12 (1), p.7166-7166, Article 7166

2021

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Translational autoregulation of BZW1 and BZW2 expression by modulating the stringency of start codon selection

PloS one, 2018-02, Vol.13 (2), p.e0192648-e0192648

2018

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The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

RNA (Cambridge), 2015-10, Vol.21 (10), p.1731-1745

2015

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Observation of dually decoded regions of the human genome using ribosome profiling data

Genome research, 2012-11, Vol.22 (11), p.2219-2229

2012

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Identification of a novel splice variant form of the influenza A virus M2 ion channel with an antigenically distinct ectodomain

PLoS pathogens, 2012-11, Vol.8 (11), p.e1002998-e1002998

2012

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A swine arterivirus deubiquitinase stabilizes two major envelope proteins and promotes production of viral progeny

PLoS pathogens, 2021-03, Vol.17 (3), p.e1009403-e1009403

2021

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Non-canonical translation in RNA viruses

A hidden gene in astroviruses encodes a viroporin

Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling

Identification of RNA Virus–Derived RdRp Sequences in Publicly Available Transcriptomic Data Sets

Manipulation of the unfolded protein response: A pharmacological strategy against coronavirus infection

Detection of a fourth orbivirus non-structural protein

CIAlign: A highly customisable command line tool to clean, interpret and visualise multiple sequence alignments

Turnip Mosaic Virus Transcriptional Slippage Dynamics and Distribution in RNA Subpopulations

CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms

Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts

New insights into flavivirus evolution, taxonomy and biogeographic history, extended by analysis of canonical and alternative coding sequences

Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution

An RNA thermoswitch regulates daytime growth in Arabidopsis

overlapping essential gene in the Potyviridae

Discovery of a Small Non-AUG-Initiated ORF in Poleroviruses and Luteoviruses That Is Required for Long-Distance Movement

Protein-directed ribosomal frameshifting temporally regulates gene expression

Avoidance of reporter assay distortions from fused dual reporters

Efficient −2 frameshifting by mammalian ribosomes to synthesize an additional arterivirus protein

Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

Translational autoregulation of BZW1 and BZW2 expression by modulating the stringency of start codon selection

The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

Observation of dually decoded regions of the human genome using ribosome profiling data

Identification of a novel splice variant form of the influenza A virus M2 ion channel with an antigenically distinct ectodomain

A swine arterivirus deubiquitinase stabilizes two major envelope proteins and promotes production of viral progeny

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