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Deep learning models for bacteria taxonomic classification of metagenomic data

BMC bioinformatics, 2018-07, Vol.19 (Suppl 7), p.198-198, Article 198

2018

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A Graph Neural Network Approach for the Analysis of siRNA-Target Biological Networks

International journal of molecular sciences, 2022-11, Vol.23 (22), p.14211

2022

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Probabilistic topic modeling for the analysis and classification of genomic sequences

BMC bioinformatics, 2015-04, Vol.16 Suppl 6 (S6), p.S2-S2, Article S2

2015

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MiRNA therapeutics based on logic circuits of biological pathways

BMC bioinformatics, 2019-11, Vol.20 (Suppl 9), p.344-22, Article 344

2019

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miRTissue: a web application for the analysis of miRNA-target interactions in human tissues

BMC bioinformatics, 2018-11, Vol.19 (Suppl 15), p.434-434, Article 434

2018

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miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions

BMC bioinformatics, 2020-09, Vol.21 (Suppl 8), p.1-199, Article 199

2020

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Transcriptomic and Bioinformatic Analyses Identifying a Central Mif-Cop9-Nf-kB Signaling Network in Innate Immunity Response of Ciona robusta

International journal of molecular sciences, 2023-02, Vol.24 (4), p.4112

2023

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Transcriptomic Analyses Reveal 2 and 4 Family Members of Cytochromes P450 (CYP) Involved in LPS Inflammatory Response in Pharynx of Ciona robusta

International journal of molecular sciences, 2021-10, Vol.22 (20), p.11141

2021

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ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta

International journal of molecular sciences, 2021-03, Vol.22 (7), p.3497

2021

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BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics

BMC bioinformatics, 2020-09, Vol.21 (Suppl 8), p.363-363, Article 363

2020

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Impact of the flame retardant 2,2'4,4'-tetrabromodiphenyl ether (PBDE-47) in THP-1 macrophage-like cell function via small extracellular vesicles

Frontiers in immunology, 2023-01, Vol.13, p.1069207

2023

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nRC: non-coding RNA Classifier based on structural features

BioData mining, 2017-08, Vol.10 (1), p.27-27, Article 27

2017

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2,2’4,4’-Tetrabromodiphenyl Ether (PBDE-47) Modulates the Intracellular miRNA Profile, sEV Biogenesis and Their miRNA Cargo Exacerbating the LPS-Induced Pro-Inflammatory Response in THP-1 Macrophages

Frontiers in immunology, 2021-05, Vol.12, p.664534-664534

2021

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The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes

BMC bioinformatics, 2019-04, Vol.20 (Suppl 4), p.125-125, Article 125

2019

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A knowledge-based decision support system in bioinformatics: an application to protein complex extraction

BMC bioinformatics, 2013, Vol.14 Suppl 1 (Suppl 1), p.S5-S5, Article S5

2013

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Direct RNA Nanopore Sequencing of SARS-CoV-2 Extracted from Critical Material from Swabs

Life (Basel, Switzerland), 2022-01, Vol.12 (1), p.69

2022

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GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data

Briefings in bioinformatics, 2023-09, Vol.24 (6)

2023

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BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources

BMC systems biology, 2018-11, Vol.12 (Suppl 5), p.98-98, Article 98

2018

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Transcriptomic and Bioinformatic Analyses Identifying a Central Mif-Cop9-Nf-kB Signaling Network in Innate Immunity Response of ICiona robusta/I

International journal of molecular sciences, 2023-02, Vol.24 (4)

2023

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Analysis of miRNA expression profiles in breast cancer using biclustering

BMC bioinformatics, 2015-02, Vol.16 Suppl 4 (S4), p.S7-S7, Article S7

2015

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A k -mer-based barcode DNA classification methodology based on spectral representation and a neural gas network

Artificial intelligence in medicine, 2015-07, Vol.64 (3), p.173-184

2015

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Alignment-free analysis of barcode sequences by means of compression-based methods

BMC bioinformatics, 2013-04, Vol.14 Suppl 7 (Suppl 7), p.S4-S4, Article S4

2013

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A New SOM Initialization Algorithm for Nonvectorial Data

Knowledge-Based Intelligent Information and Engineering Systems, Vol.5177, p.41-48

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MiRNATIP: a SOM-based miRNA-target interactions predictor

BMC bioinformatics, 2016-09, Vol.17 (Suppl 11), p.321-321, Article 321

2016

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An expert system hybrid architecture to support experiment management

Expert systems with applications, 2014-03, Vol.41 (4), p.1609-1621

2014

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Deep learning models for bacteria taxonomic classification of metagenomic data

A Graph Neural Network Approach for the Analysis of siRNA-Target Biological Networks

Probabilistic topic modeling for the analysis and classification of genomic sequences

MiRNA therapeutics based on logic circuits of biological pathways

miRTissue: a web application for the analysis of miRNA-target interactions in human tissues

miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions

Transcriptomic and Bioinformatic Analyses Identifying a Central Mif-Cop9-Nf-kB Signaling Network in Innate Immunity Response of Ciona robusta

Transcriptomic Analyses Reveal 2 and 4 Family Members of Cytochromes P450 (CYP) Involved in LPS Inflammatory Response in Pharynx of Ciona robusta

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta

BITS2019: the sixteenth annual meeting of the Italian society of bioinformatics

Impact of the flame retardant 2,2'4,4'-tetrabromodiphenyl ether (PBDE-47) in THP-1 macrophage-like cell function via small extracellular vesicles

nRC: non-coding RNA Classifier based on structural features

2,2’4,4’-Tetrabromodiphenyl Ether (PBDE-47) Modulates the Intracellular miRNA Profile, sEV Biogenesis and Their miRNA Cargo Exacerbating the LPS-Induced Pro-Inflammatory Response in THP-1 Macrophages

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes

A knowledge-based decision support system in bioinformatics: an application to protein complex extraction

Direct RNA Nanopore Sequencing of SARS-CoV-2 Extracted from Critical Material from Swabs

GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data

BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources

Transcriptomic and Bioinformatic Analyses Identifying a Central Mif-Cop9-Nf-kB Signaling Network in Innate Immunity Response of ICiona robusta/I

Analysis of miRNA expression profiles in breast cancer using biclustering

A k -mer-based barcode DNA classification methodology based on spectral representation and a neural gas network

Alignment-free analysis of barcode sequences by means of compression-based methods

A New SOM Initialization Algorithm for Nonvectorial Data

MiRNATIP: a SOM-based miRNA-target interactions predictor

An expert system hybrid architecture to support experiment management

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