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HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees

Evolutionary bioinformatics online, 2018, Vol.14, p.1176934317742613-1176934317742613

2018

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Glacial survival in northern refugia? Phylogeography of the temperate shrub Rosa pendulina L. (Rosaceae): AFLP vs. chloroplast DNA variation

Biological journal of the Linnean Society, 2016-11, Vol.119 (3), p.704-718

2016

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Phylogeny of Globba section Nudae and taxonomic revision of the new Globba subsection Pelecantherae

Plant systematics and evolution, 2022-02, Vol.308 (1), Article 5

2022

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Intraspecific differentiation of Sparganium erectum in the Czech Republic: molecular, genome size and morphometric analysis

Preslia (Praha), 2020, Vol.92 (2)

2020

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Resolving the rapid plant radiation of early diverging lineages in the tropical Zingiberales: Pushing the limits of genomic data

Molecular phylogenetics and evolution, 2018-11, Vol.128, p.55-68

2018

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Convergent morphology in Alpinieae (Zingiberaceae): Recircumscribing Amomum as a monophyletic genus

Taxon, 2018-02, Vol.67 (1), p.6-36

2018

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Utilizing paralogues for phylogenetic reconstruction has the potential to increase species tree support and reduce gene tree discordance in target enrichment data

Molecular ecology resources, 2022-11, Vol.22 (8), p.3018-3034

2022

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The cardamom conundrum resolved: Recircumscription and placement of Elettaria in the only pantropically distributed ginger lineage

Taxon, 2024-10, Vol.73 (5), p.1187-1213

2024

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Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae)

Botanical journal of the Linnean Society, 2020-03, Vol.192 (4), p.642-655

2020

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Next-generation sequencing data show rapid radiation and several long-distance dispersal events in early Costaceae

Molecular phylogenetics and evolution, 2023-02, Vol.179, p.107664-107664, Article 107664

2023

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Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods

Molecular phylogenetics and evolution, 2023-01, Vol.178, p.107666-107666, Article 107666

2023

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Is Betula carpatica genetically distinctive? A morphometric, cytometric and molecular study of birches in the Bohemian Massif with a focus on Carpathian birch

PloS one, 2019-10, Vol.14 (10), p.e0224387

2019

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Evolutionary relationships within the Phytophthora cactorum species complex in Europe

Fungal biology, 2016-06, Vol.120 (6-7), p.836-851

2016

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Ancient hybridization and repetitive element proliferation in the evolutionary history of the monocot genus Amomum (Zingiberaceae)

Frontiers in plant science, 2024, Vol.15, p.1324358-1324358

2024

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Ancient hybridization in Curcuma (Zingiberaceae)-Accelerator or brake in lineage diversifications?

The Plant journal : for cell and molecular biology, 2023-11, Vol.116 (3), p.773-785

2023

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The origin of unique diversity in deglaciated areas: traces of Pleistocene processes in north-European endemics from the Galium pusillum polyploid complex (Rubiaceae)

Molecular ecology, 2015-03, Vol.24 (6), p.1311-1334

2015

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Phylogeny of Curcuma (Zingiberaceae) based on plastid and nuclear sequences: Proposal of the new subgenus Ecomata

Taxon, 2012-08, Vol.61 (4), p.747-763

2012

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Hybridization among distantly related species: Examples from the polyploid genus Curcuma (Zingiberaceae)

Molecular phylogenetics and evolution, 2016-07, Vol.100, p.303-321

2016

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Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae

Applications in plant sciences, 2021-07, Vol.9 (7), p.e11442-n/a

2021

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Anagenetic evolution in island plants

Journal of biogeography, 2006-07, Vol.33 (7), p.1259-1265

2006

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An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae

Applications in plant sciences, 2019-10, Vol.7 (10), p.e11295-n/a

2019

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Detecting dispersal of Nuphar lutea in river corridors using microsatellite markers

Freshwater biology, 2008-07, Vol.53 (7), p.1409-1422

2008

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Genetic diversity and dispersal of Phragmites australis in a small river system

Aquatic botany, 2009-02, Vol.90 (2), p.165-171

2009

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Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes

Ecology and evolution, 2017-08, Vol.7 (16), p.6455-6468

2017

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Ecological hybrid speciation in central-European species of Bolboschoenus: genetic and morphological evaluation

Preslia (Praha), 2017-02, Vol.89 (1), p.17-39

2017

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HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees

Glacial survival in northern refugia? Phylogeography of the temperate shrub Rosa pendulina L. (Rosaceae): AFLP vs. chloroplast DNA variation

Phylogeny of Globba section Nudae and taxonomic revision of the new Globba subsection Pelecantherae

Intraspecific differentiation of Sparganium erectum in the Czech Republic: molecular, genome size and morphometric analysis

Resolving the rapid plant radiation of early diverging lineages in the tropical Zingiberales: Pushing the limits of genomic data

Convergent morphology in Alpinieae (Zingiberaceae): Recircumscribing Amomum as a monophyletic genus

Utilizing paralogues for phylogenetic reconstruction has the potential to increase species tree support and reduce gene tree discordance in target enrichment data

The cardamom conundrum resolved: Recircumscription and placement of Elettaria in the only pantropically distributed ginger lineage

Phylogenomic insights into the Fascicularia-Ochagavia group (Bromelioideae, Bromeliaceae)

Next-generation sequencing data show rapid radiation and several long-distance dispersal events in early Costaceae

Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods

Is Betula carpatica genetically distinctive? A morphometric, cytometric and molecular study of birches in the Bohemian Massif with a focus on Carpathian birch

Evolutionary relationships within the Phytophthora cactorum species complex in Europe

Ancient hybridization and repetitive element proliferation in the evolutionary history of the monocot genus Amomum (Zingiberaceae)

Ancient hybridization in Curcuma (Zingiberaceae)-Accelerator or brake in lineage diversifications?

The origin of unique diversity in deglaciated areas: traces of Pleistocene processes in north-European endemics from the Galium pusillum polyploid complex (Rubiaceae)

Phylogeny of Curcuma (Zingiberaceae) based on plastid and nuclear sequences: Proposal of the new subgenus Ecomata

Hybridization among distantly related species: Examples from the polyploid genus Curcuma (Zingiberaceae)

Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae

Anagenetic evolution in island plants

An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae

Detecting dispersal of Nuphar lutea in river corridors using microsatellite markers

Genetic diversity and dispersal of Phragmites australis in a small river system

Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes

Ecological hybrid speciation in central-European species of Bolboschoenus: genetic and morphological evaluation

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