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Pathogen.jl : Infectious Disease Transmission Network Modeling with Julia

Journal of statistical software, 2022-09, Vol.104 (4), p.1-30

2022

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Improving monitoring of fish health in the oil sands region using regularization techniques and water quality variables

The Science of the total environment, 2022-03, Vol.811, p.152301-152301, Article 152301

2022

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A real data-driven simulation strategy to select an imputation method for mixed-type trait data

PLoS computational biology, 2023-03, Vol.19 (3), p.e1010154-e1010154

2023

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ATQ: alert time quality, an evaluation metric for assessing timely epidemic detection models within a school absenteeism-based surveillance system

BMC public health, 2023-05, Vol.23 (1), p.850-17, Article 850

2023

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Assessing the Interpretability–Performance Trade-Off of Artificial Neural Networks Using Sentinel Fish Health Data

Environments (Basel, Switzerland), 2024-05, Vol.11 (5), p.94

2024

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A model-based framework for chronic hepatitis C prevalence estimation

PloS one, 2019-11, Vol.14 (11), p.e0225366-e0225366

2019

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The Relationship between Single Nucleotide Polymorphisms in Taste Receptor Genes, Taste Function and Dietary Intake in Preschool-Aged Children and Adults in the Guelph Family Health Study

Nutrients, 2018-07, Vol.10 (8), p.990

2018

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Methods for detecting seasonal influenza epidemics using a school absenteeism surveillance system

BMC public health, 2019-09, Vol.19 (1), p.1232-1232, Article 1232

2019

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A discussion of 'prior-based Bayesian information criterion'

Statistical theory and related fields, 2019-01, Vol.3 (1), p.14-16

2019

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A Parallel Sliding Region Algorithm to Make Agent-Based Modeling Possible for a Large-Scale Simulation: Modeling Hepatitis C Epidemics in Canada

IEEE journal of biomedical and health informatics, 2016-11, Vol.20 (6), p.1538-1544

2016

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Estimation of COVID-19 Period Prevalence and the Undiagnosed Population in Canadian Provinces: Model-Based Analysis

JMIR public health and surveillance, 2021-09, Vol.7 (9), p.e26409-e26409

2021

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Urinary Metabolite Profiling to Non-Invasively Monitor the Omega-3 Index: An Exploratory Secondary Analysis of a Randomized Clinical Trial in Young Adults

Metabolites, 2023-10, Vol.13 (10), p.1071

2023

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Application of next generation sequencing for detection of protozoan pathogens in shellfish

Food and waterborne parasitology, 2020-12, Vol.21, p.e00096-e00096, Article e00096

2020

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Multiple-platform data integration method with application to combined analysis of microarray and proteomic data

BMC bioinformatics, 2012-12, Vol.13 (1), p.320-320, Article 320

2012

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The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits

IEEE/ACM transactions on computational biology and bioinformatics, 2012-03, Vol.9 (2), p.629-636

2012

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A generalized quasi-likelihood scoring approach for simultaneously testing the genetic association of multiple traits

Journal of the Royal Statistical Society, 2014-04, Vol.63 (3), p.483-498

Feng, Zeny

2014

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Imputing genotypes using regularized generalized linear regression models

Statistical applications in genetics and molecular biology, 2014-10, Vol.13 (5), p.519-529

2014

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Cluster analysis of microbiome data by using mixtures of Dirichlet–multinomial regression models

Journal of the Royal Statistical Society Series C: Applied Statistics, 2020-11, Vol.69 (5), p.1163-1187

2020

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Feasibility of hepatitis B elimination in high-income countries with ongoing immigration

Journal of hepatology, 2022-10, Vol.77 (4), p.947-956

2022

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Inference of latent event times and transmission networks in individual level infectious disease models

Spatial and spatio-temporal epidemiology, 2021-06, Vol.37, p.100410, Article 100410

2021

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Feasibility of hepatitis C elimination by screening and treatment alone in high-income countries

Hepatology (Baltimore, Md.), 2024-08, Vol.80 (2), p.440-450

2024

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Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

BMC genomics, 2017-03, Vol.18 (1), p.229-229, Article 229

2017

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The Effects of Ecological Traits on the Rate of Molecular Evolution in Ray-Finned Fishes: A Multivariable Approach

Journal of molecular evolution, 2020-11, Vol.88 (8-9), p.689-702

2020

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CAR T-cell Therapy for Diffuse Large B-cell Lymphoma in Canada: A Cost-Utility Analysis

Medical decision making, 2024-04, Vol.44 (3), p.296-306

2024

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A 2-step strategy for detecting pleiotropic effects on multiple longitudinal traits

Frontiers in genetics, 2014-10, Vol.5, p.357-357

2014

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Pathogen.jl : Infectious Disease Transmission Network Modeling with Julia

Improving monitoring of fish health in the oil sands region using regularization techniques and water quality variables

A real data-driven simulation strategy to select an imputation method for mixed-type trait data

ATQ: alert time quality, an evaluation metric for assessing timely epidemic detection models within a school absenteeism-based surveillance system

Assessing the Interpretability–Performance Trade-Off of Artificial Neural Networks Using Sentinel Fish Health Data

A model-based framework for chronic hepatitis C prevalence estimation

The Relationship between Single Nucleotide Polymorphisms in Taste Receptor Genes, Taste Function and Dietary Intake in Preschool-Aged Children and Adults in the Guelph Family Health Study

Methods for detecting seasonal influenza epidemics using a school absenteeism surveillance system

A discussion of 'prior-based Bayesian information criterion'

A Parallel Sliding Region Algorithm to Make Agent-Based Modeling Possible for a Large-Scale Simulation: Modeling Hepatitis C Epidemics in Canada

Estimation of COVID-19 Period Prevalence and the Undiagnosed Population in Canadian Provinces: Model-Based Analysis

Urinary Metabolite Profiling to Non-Invasively Monitor the Omega-3 Index: An Exploratory Secondary Analysis of a Randomized Clinical Trial in Young Adults

Application of next generation sequencing for detection of protozoan pathogens in shellfish

Multiple-platform data integration method with application to combined analysis of microarray and proteomic data

The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits

A generalized quasi-likelihood scoring approach for simultaneously testing the genetic association of multiple traits

Imputing genotypes using regularized generalized linear regression models

Cluster analysis of microbiome data by using mixtures of Dirichlet–multinomial regression models

Feasibility of hepatitis B elimination in high-income countries with ongoing immigration

Inference of latent event times and transmission networks in individual level infectious disease models

Feasibility of hepatitis C elimination by screening and treatment alone in high-income countries

Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

The Effects of Ecological Traits on the Rate of Molecular Evolution in Ray-Finned Fishes: A Multivariable Approach

CAR T-cell Therapy for Diffuse Large B-cell Lymphoma in Canada: A Cost-Utility Analysis

A 2-step strategy for detecting pleiotropic effects on multiple longitudinal traits

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