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Gut-microbiota-targeted diets modulate human immune status

Cell, 2021-08, Vol.184 (16), p.4137-4153.e14

2021

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Single-cell transcriptional diversity is a hallmark of developmental potential

Science (American Association for the Advancement of Science), 2020-01, Vol.367 (6476), p.405-411

2020

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Robust variation in infant gut microbiome assembly across a spectrum of lifestyles

Science (American Association for the Advancement of Science), 2022-06, Vol.376 (6598), p.1220-1223

2022

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Hidden diversity of soil giant viruses

Nature communications, 2018-11, Vol.9 (1), p.4881-9, Article 4881

2018

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Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome

Cell reports (Cambridge), 2021-11, Vol.37 (5), p.109930-109930, Article 109930

2021

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Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

PLoS biology, 2017-12, Vol.15 (12), p.e2004050-e2004050

2017

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Design, construction, and in vivo augmentation of a complex gut microbiome

Cell, 2022-09, Vol.185 (19), p.3617-3636.e19

2022

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Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes

Cell, 2023-07, Vol.186 (14), p.3111-3124.e13

2023

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Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization

Nature communications, 2023-06, Vol.14 (1), p.3510-3510, Article 3510

2023

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Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

Proceedings of the National Academy of Sciences - PNAS, 2019-03, Vol.116 (11), p.5037-5044

2019

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Testing of Flow-Based Microfluidic Biochips: Fault Modeling, Test Generation, and Experimental Demonstration

IEEE transactions on computer-aided design of integrated circuits and systems, 2014-10, Vol.33 (10), p.1463-1475

2014

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Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily

The ISME Journal, 2022-07, Vol.16 (7), p.1750-1764

2022

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ENPP1 is an innate immune checkpoint of the anticancer cGAMP-STING pathway in breast cancer

Proceedings of the National Academy of Sciences - PNAS, 2023-12, Vol.120 (52), p.e2313693120-e2313693120

2023

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Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron

BMC biology, 2022-12, Vol.20 (1), p.285-17, Article 285

2022

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A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria

Cell host & microbe, 2020-06, Vol.27 (6), p.1001-1013.e9

2020

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Microfluidic serial digital to analog pressure converter for arbitrary pressure generation and contamination-free flow control

Lab on a chip, 2013, Vol.13 (10), p.1911

2013

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Evidence for the prepattern/cooption model of vertebrate jaw evolution

Proceedings of the National Academy of Sciences - PNAS, 2010-10, Vol.107 (40), p.17262-17267

2010

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Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

Microbiome, 2021-06, Vol.9 (1), p.142-142, Article 142

2021

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Draft genome of Chloroflexus sp. MS-CIW-1, of the Chloroflexus sp. MS-G group from Mushroom Spring, Yellowstone National Park

Microbiology resource announcements, 2024-03, Vol.13 (3), p.e0071023-e0071023

2024

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Draft genome of Chloroflexu s sp. MS-CIW-1, of the Chloroflexus sp. MS-G group from Mushroom Spring, Yellowstone National Park

Microbiology resource announcements, 2024-03, Vol.13 (3), p.e0071023

2024

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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples

eLife, 2017-07, Vol.6

2017

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The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut

mBio, 2022-04, Vol.13 (2), p.e0294921

2022

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Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing

BMC biology, 2017-02, Vol.15 (1), p.11-11, Article 11

2017

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Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs

Cell host & microbe, 2019-11, Vol.26 (5), p.650-665.e4

2019

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Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes

Cell host & microbe, 2022-06, Vol.30 (6), p.863-874.e4

2022

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Gut-microbiota-targeted diets modulate human immune status

Single-cell transcriptional diversity is a hallmark of developmental potential

Robust variation in infant gut microbiome assembly across a spectrum of lifestyles

Hidden diversity of soil giant viruses

Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

Design, construction, and in vivo augmentation of a complex gut microbiome

Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes

Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization

Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

Testing of Flow-Based Microfluidic Biochips: Fault Modeling, Test Generation, and Experimental Demonstration

Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily

ENPP1 is an innate immune checkpoint of the anticancer cGAMP-STING pathway in breast cancer

Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron

A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria

Microfluidic serial digital to analog pressure converter for arbitrary pressure generation and contamination-free flow control

Evidence for the prepattern/cooption model of vertebrate jaw evolution

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

Draft genome of Chloroflexus sp. MS-CIW-1, of the Chloroflexus sp. MS-G group from Mushroom Spring, Yellowstone National Park

Draft genome of Chloroflexu s sp. MS-CIW-1, of the Chloroflexus sp. MS-G group from Mushroom Spring, Yellowstone National Park

Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples

The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut

Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing

Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs

Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes

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