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Insights from genomic profiling of transcription factors

Nature reviews. Genetics, 2009-09, Vol.10 (9), p.605-616

Farnham, Peggy J

2009

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Cross-talk between Site-specific Transcription Factors and DNA Methylation States

The Journal of biological chemistry, 2013-11, Vol.288 (48), p.34287-34294

2013

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Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells

PloS one, 2020-02, Vol.15 (2), p.e0228590-e0228590

2020

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A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

Nature communications, 2019-09, Vol.10 (1), p.4154-12, Article 4154

2019

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Comprehensive functional annotation of 77 prostate cancer risk loci

PLoS genetics, 2014-01, Vol.10 (1), p.e1004102

2014

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Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters

Nucleic acids research, 2020-06, Vol.48 (11), p.5986-6000

2020

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Functional annotation of colon cancer risk SNPs

Nature communications, 2014-09, Vol.5 (1), p.5114-5114, Article 5114

2014

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TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma

PLoS genetics, 2020-09, Vol.16 (9), p.e1009023

2020

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Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability

Genome Biology, 2022-07, Vol.23 (1), p.1-163, Article 163

2022

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Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (17), p.6131-6138

2014

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Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters

Nucleic acids research, 2024-07, Vol.52 (12), p.6850-6865

2024

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Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

Cell, 2007-06, Vol.129 (7), p.1311-1323

2007

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A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13

Cell reports (Cambridge), 2017-11, Vol.21 (6), p.1411-1417

2017

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CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

Genome Biology, 2018-10, Vol.19 (1), p.160-17, Article 160

2018

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ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes

PloS one, 2010-12, Vol.5 (12), p.e15082-e15082

2010

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Using ChIP-seq technology to generate high-resolution profiles of histone modifications

Methods in molecular biology (Clifton, N.J.), 2011-01, Vol.791, p.265

2011

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L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure

Molecular cell, 2011-05, Vol.42 (4), p.438-450

2011

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Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy

Molecular cell, 2009-11, Vol.36 (4), p.667-681

2009

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Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner

Epigenetics & chromatin, 2019-05, Vol.12 (1), p.26-26, Article 26

2019

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The role of DNA methylation in directing the functional organization of the cancer epigenome

Genome research, 2015-04, Vol.25 (4), p.467-477

2015

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Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes

Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (49), p.19416-19421

2007

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Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros

Nature immunology, 2013-10, Vol.14 (10), p.1073-1083

2013

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Autophagy Driven by a Master Regulator of Hematopoiesis

Molecular and Cellular Biology, 2012-01, Vol.32 (1), p.226-239

2012

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Genetic framework for GATA factor function in vascular biology

Proceedings of the National Academy of Sciences - PNAS, 2011-08, Vol.108 (33), p.13641-13646

2011

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Epigenetic modulation of miR-122 facilitates human embryonic stem cell self-renewal and hepatocellular carcinoma proliferation

PloS one, 2011-11, Vol.6 (11), p.e27740-e27740

2011

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Insights from genomic profiling of transcription factors

Cross-talk between Site-specific Transcription Factors and DNA Methylation States

Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells

A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

Comprehensive functional annotation of 77 prostate cancer risk loci

Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters

Functional annotation of colon cancer risk SNPs

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma

Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability

Defining functional DNA elements in the human genome

Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters

Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes

Using ChIP-seq technology to generate high-resolution profiles of histone modifications

L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure

Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy

Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner

The role of DNA methylation in directing the functional organization of the cancer epigenome

Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes

Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros

Autophagy Driven by a Master Regulator of Hematopoiesis

Genetic framework for GATA factor function in vascular biology

Epigenetic modulation of miR-122 facilitates human embryonic stem cell self-renewal and hepatocellular carcinoma proliferation

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