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Insights from genomic profiling of transcription factors

Nature reviews. Genetics, 2009-09, Vol.10 (9), p.605-616

Farnham, Peggy J

2009

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Cross-talk between Site-specific Transcription Factors and DNA Methylation States

The Journal of biological chemistry, 2013-11, Vol.288 (48), p.34287-34294

2013

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KAP1 Protein: An Enigmatic Master Regulator of the Genome

The Journal of biological chemistry, 2011-07, Vol.286 (30), p.26267-26276

2011

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Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells

PloS one, 2020-02, Vol.15 (2), p.e0228590-e0228590

2020

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Comprehensive functional annotation of 77 prostate cancer risk loci

PLoS genetics, 2014-01, Vol.10 (1), p.e1004102

2014

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Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome

Epigenetics & chromatin, 2015-12, Vol.8 (50), p.57-57, Article 57

2015

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TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma

PLoS genetics, 2020-09, Vol.16 (9), p.e1009023

2020

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ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes

PloS one, 2010-12, Vol.5 (12), p.e15082-e15082

2010

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A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

Nature communications, 2019-09, Vol.10 (1), p.4154-12, Article 4154

2019

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Functional annotation of colon cancer risk SNPs

Nature communications, 2014-09, Vol.5 (1), p.5114-5114, Article 5114

2014

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Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters

Nucleic acids research, 2020-06, Vol.48 (11), p.5986

2020

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L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure

Molecular cell, 2011-05, Vol.42 (4), p.438-450

2011

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Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

Genome Biology, 2015-05, Vol.16 (1), p.105-105, Article 105

2015

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Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (17), p.6131-6138

2014

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Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

Cell, 2007-06, Vol.129 (7), p.1311-1323

2007

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A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13

Cell reports (Cambridge), 2017-11, Vol.21 (6), p.1411-1417

2017

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Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability

Genome Biology, 2022-07, Vol.23 (1), p.1-163, Article 163

2022

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Using ChIP-seq technology to generate high-resolution profiles of histone modifications

Methods in molecular biology (Clifton, N.J.), 2011-01, Vol.791, p.265

2011

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CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

Genome Biology, 2018-10, Vol.19 (1), p.160-17, Article 160

2018

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Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes

Critical reviews in biochemistry and molecular biology, 2015-11, Vol.50 (6), p.550-573

2015

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Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy

Molecular cell, 2009-11, Vol.36 (4), p.667-681

2009

Volltextzugriff (PDF)

dCas9-based epigenome editing suggests acquisition of histone methylation is not sufficient for target gene repression

Nucleic acids research, 2017-09, Vol.45 (17), p.9901

2017

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Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner

Epigenetics & chromatin, 2019-05, Vol.12 (1), p.26-26, Article 26

2019

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The Enigmatic HOX Genes: Can We Crack Their Code?

Cancers, 2019-03, Vol.11 (3), p.323

2019

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Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

Genome biology, 2012-09, Vol.13 (9), p.R52-R52

2012

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Insights from genomic profiling of transcription factors

Cross-talk between Site-specific Transcription Factors and DNA Methylation States

KAP1 Protein: An Enigmatic Master Regulator of the Genome

Genome-wide analysis of HOXC4 and HOXC6 regulated genes and binding sites in prostate cancer cells

Comprehensive functional annotation of 77 prostate cancer risk loci

Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes

A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

Functional annotation of colon cancer risk SNPs

Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters

L3MBTL2 Protein Acts in Concert with PcG Protein-Mediated Monoubiquitination of H2A to Establish a Repressive Chromatin Structure

Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

Defining functional DNA elements in the human genome

Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs

A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13

Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability

Using ChIP-seq technology to generate high-resolution profiles of histone modifications

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops

Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes

Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy

dCas9-based epigenome editing suggests acquisition of histone methylation is not sufficient for target gene repression

Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner

The Enigmatic HOX Genes: Can We Crack Their Code?

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

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