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Exploring the fragmentation efficiency of proteins analyzed by MALDI-TOF-TOF tandem mass spectrometry using computational and statistical analyses

PloS one, 2024-05, Vol.19 (5), p.e0299287-e0299287

2024

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Top-down proteomic identification of plasmid and host proteins produced by pathogenic Escherichia coli using MALDI-TOF-TOF tandem mass spectrometry

PloS one, 2021-11, Vol.16 (11), p.e0260650-e0260650

2021

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Unusual modifications of protein biomarkers expressed by plasmid, prophage, and bacterial host of pathogenic Escherichia coli identified using top‐down proteomic analysis

Rapid communications in mass spectrometry, 2024-01, Vol.38 (1), p.e9667-n/a

2024

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Toxin and phage production from pathogenic E. coli by antibiotic induction analyzed by chemical reduction, MALDI‐TOF‐TOF mass spectrometry and top‐down proteomic analysis

Rapid communications in mass spectrometry, 2023-03, Vol.37 (10), p.e9505-n/a

2023

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Identification of Antibacterial Immunity Proteins in Escherichia coli using MALDI-TOF-TOF-MS/MS and Top-Down Proteomic Analysis

Journal of visualized experiments, 2021-05 (171)

2021

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Unlocking the proteomic information encoded in MALDI-TOF-MS data used for microbial identification and characterization

Expert review of proteomics, 2017-01, Vol.14 (1), p.97-107

Fagerquist, Clifton K.

2017

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Top-down proteomic identification of Shiga toxin 2 subtypes from Shiga toxin-producing Escherichia coli by matrix-assisted laser desorption ionization-tandem time of flight mass spectrometry

Applied and Environmental Microbiology, 2014-05, Vol.80 (9), p.2928-2940

2014

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Bacteriophage cell lysis of Shiga toxin-producing Escherichia coli for top-down proteomic identification of Shiga toxins 1 & 2 using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry

Rapid communications in mass spectrometry, 2016-03, Vol.30 (6), p.671-680

2016

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A new calibrant for matrix-assisted laser desorption/ionization time-of-flight-time-of-flight post-source decay tandem mass spectrometry of non-digested proteins for top-down proteomic analysis

Rapid communications in mass spectrometry, 2012-05, Vol.26 (10), p.1241-1248

2012

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Rapid Identification of Protein Biomarkers of Escherichia coli O157:H7 by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight−Time-of-Flight Mass Spectrometry and Top-Down Proteomics

Analytical chemistry (Washington), 2010-04, Vol.82 (7), p.2717-2725

2010

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Shiga Toxin 2 Subtypes of Enterohemorrhagic E. coli O157:H- E32511 Analyzed by RT-qPCR and Top-Down Proteomics Using MALDI-TOF-TOF-MS

Journal of the American Society for Mass Spectrometry, 2015-05, Vol.26 (5), p.788-799

2015

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Induction and identification of disulfide-intact and disulfide-reduced β-subunit of Shiga toxin 2 from Escherichia coli O157:H7 using MALDI-TOF-TOF-MS/MS and top-down proteomics

Analyst (London), 2011-04, Vol.136 (8), p.1739-1746

2011

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Top-down and middle-down proteomic analysis of Shiga toxin using MALDI-TOF-TOF mass spectrometry

MethodsX, 2019-01, Vol.6, p.815-826

2019

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RcsB Contributes to the Distinct Stress Fitness among Escherichia coli O157:H7 Curli Variants of the 1993 Hamburger-Associated Outbreak Strains

Applied and Environmental Microbiology, 2012-11, Vol.78 (21), p.7706-7719

2012

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Confirmatory and Quantitative Analysis of β-Lactam Antibiotics in Bovine Kidney Tissue by Dispersive Solid-Phase Extraction and Liquid Chromatography−Tandem Mass Spectrometry

Analytical chemistry (Washington), 2005-03, Vol.77 (5), p.1473-1482

2005

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Proteolytic Surface-Shaving and Serotype-Dependent Expression of SPI-1 Invasion Proteins in Salmonella enterica Subspecies enterica

Frontiers in nutrition (Lausanne), 2018-12, Vol.5, p.124-124

2018

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Speciation of Campylobacter coli, C. jejuni, C. helveticus, C. lari, C. sputorum, and C. upsaliensis by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

Applied and Environmental Microbiology, 2005-10, Vol.71 (10), p.6292-6307

2005

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Quantification and characterization of mucosa-associated and intracellular Escherichia coli in inflammatory bowel disease

Inflammatory bowel diseases, 2013-10, Vol.19 (11), p.2326-2338

2013

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Possible Evidence of Amide Bond Formation Between Sinapinic Acid and Lysine-Containing Bacterial Proteins by Matrix-Assisted Laser Desorption/Ionization (MALDI) at 355 nm

Journal of the American Society for Mass Spectrometry, 2012-12, Vol.23 (12), p.2102-2114

2012

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Top-Down Proteomic Identification of Furin-Cleaved α-Subunit of Shiga Toxin 2 from Escherichia coli O157:H7 Using MALDI-TOF-TOF-MS/MS

BioMed research international, 2010-01, Vol.2010 (2010), p.1-11

2010

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Ratios of Regioisomers of the Molecular Species of Triacylglycerols in Lesquerella (Physaria fendleri) Oil Estimated by Mass Spectrometry

Journal of the American Oil Chemists' Society, 2016-02, Vol.93 (2), p.183-191

2016

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Top-Down Proteomic Identification of Shiga Toxin 1 and 2 from Pathogenic Escherichia coli Using MALDI-TOF-TOF Tandem Mass Spectrometry

Microorganisms (Basel), 2019-10, Vol.7 (11), p.488

2019

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Peptides Identified in Soybean Protein Increase Plasma Cholesterol in Mice on Hypercholesterolemic Diets

Journal of agricultural and food chemistry, 2013-09, Vol.61 (35), p.8389-8395

2013

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Top-down proteomic identification of bacterial protein biomarkers and toxins using MALDI-TOF-TOF-MS/MS and post-source decay

Reviews in analytical chemistry, 2013-05, Vol.32 (2), p.127-133

Fagerquist, Clifton K.

2013

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Web-Based Software for Rapid Top-Down Proteomic Identification of Protein Biomarkers, with Implications for Bacterial Identification

Applied and Environmental Microbiology, 2009-07, Vol.75 (13), p.4341-4353

2009

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Exploring the fragmentation efficiency of proteins analyzed by MALDI-TOF-TOF tandem mass spectrometry using computational and statistical analyses

Top-down proteomic identification of plasmid and host proteins produced by pathogenic Escherichia coli using MALDI-TOF-TOF tandem mass spectrometry

Unusual modifications of protein biomarkers expressed by plasmid, prophage, and bacterial host of pathogenic Escherichia coli identified using top‐down proteomic analysis

Toxin and phage production from pathogenic E. coli by antibiotic induction analyzed by chemical reduction, MALDI‐TOF‐TOF mass spectrometry and top‐down proteomic analysis

Identification of Antibacterial Immunity Proteins in Escherichia coli using MALDI-TOF-TOF-MS/MS and Top-Down Proteomic Analysis

Unlocking the proteomic information encoded in MALDI-TOF-MS data used for microbial identification and characterization

Top-down proteomic identification of Shiga toxin 2 subtypes from Shiga toxin-producing Escherichia coli by matrix-assisted laser desorption ionization-tandem time of flight mass spectrometry

Bacteriophage cell lysis of Shiga toxin-producing Escherichia coli for top-down proteomic identification of Shiga toxins 1 & 2 using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry

A new calibrant for matrix-assisted laser desorption/ionization time-of-flight-time-of-flight post-source decay tandem mass spectrometry of non-digested proteins for top-down proteomic analysis

Rapid Identification of Protein Biomarkers of Escherichia coli O157:H7 by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight−Time-of-Flight Mass Spectrometry and Top-Down Proteomics

Shiga Toxin 2 Subtypes of Enterohemorrhagic E. coli O157:H- E32511 Analyzed by RT-qPCR and Top-Down Proteomics Using MALDI-TOF-TOF-MS

Induction and identification of disulfide-intact and disulfide-reduced β-subunit of Shiga toxin 2 from Escherichia coli O157:H7 using MALDI-TOF-TOF-MS/MS and top-down proteomics

Top-down and middle-down proteomic analysis of Shiga toxin using MALDI-TOF-TOF mass spectrometry

RcsB Contributes to the Distinct Stress Fitness among Escherichia coli O157:H7 Curli Variants of the 1993 Hamburger-Associated Outbreak Strains

Confirmatory and Quantitative Analysis of β-Lactam Antibiotics in Bovine Kidney Tissue by Dispersive Solid-Phase Extraction and Liquid Chromatography−Tandem Mass Spectrometry

Proteolytic Surface-Shaving and Serotype-Dependent Expression of SPI-1 Invasion Proteins in Salmonella enterica Subspecies enterica

Speciation of Campylobacter coli, C. jejuni, C. helveticus, C. lari, C. sputorum, and C. upsaliensis by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

Quantification and characterization of mucosa-associated and intracellular Escherichia coli in inflammatory bowel disease

Possible Evidence of Amide Bond Formation Between Sinapinic Acid and Lysine-Containing Bacterial Proteins by Matrix-Assisted Laser Desorption/Ionization (MALDI) at 355 nm

Top-Down Proteomic Identification of Furin-Cleaved α-Subunit of Shiga Toxin 2 from Escherichia coli O157:H7 Using MALDI-TOF-TOF-MS/MS

Ratios of Regioisomers of the Molecular Species of Triacylglycerols in Lesquerella (Physaria fendleri) Oil Estimated by Mass Spectrometry

Top-Down Proteomic Identification of Shiga Toxin 1 and 2 from Pathogenic Escherichia coli Using MALDI-TOF-TOF Tandem Mass Spectrometry

Peptides Identified in Soybean Protein Increase Plasma Cholesterol in Mice on Hypercholesterolemic Diets

Top-down proteomic identification of bacterial protein biomarkers and toxins using MALDI-TOF-TOF-MS/MS and post-source decay

Web-Based Software for Rapid Top-Down Proteomic Identification of Protein Biomarkers, with Implications for Bacterial Identification

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