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SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation

Bioinformatics, 2019-02, Vol.35 (3), p.462-469

2019

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LightDock: a new multi-scale approach to protein-protein docking

Bioinformatics, 2018-01, Vol.34 (1), p.49-55

2018

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Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

Journal of molecular biology, 2015-09, Vol.427 (19), p.3031-3041

2015

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The scoring of poses in protein-protein docking: current capabilities and future directions

BMC bioinformatics, 2013-10, Vol.14 (1), p.286-286, Article 286

2013

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pyDockSAXS: protein-protein complex structure by SAXS and computational docking

Nucleic acids research, 2015-07, Vol.43 (W1), p.W356

2015

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Integrative modeling of protein‐protein interactions with pyDock for the new docking challenges

Proteins, structure, function, and bioinformatics, 2020-08, Vol.88 (8), p.999-1008

2020

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Structural vulnerability in EPCR suggests functional modulation

Scientific reports, 2024-01, Vol.14 (1), p.2591-2591, Article 2591

2024

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Present and future challenges and limitations in protein-protein docking

Proteins, structure, function, and bioinformatics, 2010-01, Vol.78 (1), p.95-108

2010

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Protein-protein docking and hot-spot prediction for drug discovery

Current pharmaceutical design, 2012, Vol.18 (30), p.4607

2012

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Prediction of protein-binding areas by small-world residue networks and application to docking

BMC bioinformatics, 2011-09, Vol.12 (1), p.378-378, Article 378

2011

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Optimal docking area: A new method for predicting protein-protein interaction sites

Proteins, structure, function, and bioinformatics, 2005-01, Vol.58 (1), p.134-143

2005

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LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains

PloS one, 2011-07, Vol.6 (7), p.e21614

2011

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Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization

PLoS computational biology, 2013-09, Vol.9 (9), p.e1003216

2013

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SwarmDock: a server for flexible protein-protein docking

Bioinformatics, 2013-03, Vol.29 (6), p.807-809

2013

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Structural characterization of unphosphorylated STAT5a oligomerization equilibrium in solution by small‐angle X‐ray scattering

Protein science, 2009-04, Vol.18 (4), p.716-726

2009

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Structural basis for the dominant or recessive character of GLIALCAM mutations found in leukodystrophies

Human molecular genetics, 2020-05, Vol.29 (7), p.1107-1120

2020

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Diverging co-translational protein complex assembly pathways are governed by interface energy distribution

Nature communications, 2024-03, Vol.15 (1), p.2638-2638, Article 2638

2024

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IRaPPA: information retrieval based integration of biophysical models for protein assembly selection

Bioinformatics (Oxford, England), 2017-06, Vol.33 (12), p.1806-1813

2017

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Novel treatment strategy for NRAS-mutated melanoma through a selective inhibitor of CD147/VEGFR-2 interaction

Oncogene, 2022-04, Vol.41 (15), p.2254-2264

2022

Volltextzugriff (PDF)

pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring

Bioinformatics, 2013-07, Vol.29 (13), p.1698-1699

2013

Volltextzugriff (PDF)

SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models

Bioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2600-2607

2012

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Hot-spot analysis for drug discovery targeting protein-protein interactions

Expert opinion on drug discovery, 2018-04, Vol.13 (4), p.327-338

2018

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Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

Proteomics (Weinheim), 2023-09, Vol.23 (17), p.e2200323-n/a

2023

Volltextzugriff (PDF)

Intrinsically active MEK variants are differentially regulated by proteinases and phosphatases

Scientific reports, 2018-08, Vol.8 (1), p.11830-16, Article 11830

2018

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Structural assembly of two-domain proteins by rigid-body docking

BMC bioinformatics, 2008-10, Vol.9 (1), p.441-441, Article 441

2008

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SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation

LightDock: a new multi-scale approach to protein-protein docking

Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

The scoring of poses in protein-protein docking: current capabilities and future directions

pyDockSAXS: protein-protein complex structure by SAXS and computational docking

Integrative modeling of protein‐protein interactions with pyDock for the new docking challenges

Structural vulnerability in EPCR suggests functional modulation

Present and future challenges and limitations in protein-protein docking

Protein-protein docking and hot-spot prediction for drug discovery

Prediction of protein-binding areas by small-world residue networks and application to docking

Optimal docking area: A new method for predicting protein-protein interaction sites

LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains

Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization

SwarmDock: a server for flexible protein-protein docking

Structural characterization of unphosphorylated STAT5a oligomerization equilibrium in solution by small‐angle X‐ray scattering

Structural basis for the dominant or recessive character of GLIALCAM mutations found in leukodystrophies

Diverging co-translational protein complex assembly pathways are governed by interface energy distribution

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection

Novel treatment strategy for NRAS-mutated melanoma through a selective inhibitor of CD147/VEGFR-2 interaction

pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring

SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models

Hot-spot analysis for drug discovery targeting protein-protein interactions

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

Intrinsically active MEK variants are differentially regulated by proteinases and phosphatases

Structural assembly of two-domain proteins by rigid-body docking

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