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Sequence type analysis and recombinational tests (START)

Bioinformatics, 2001-12, Vol.17 (12), p.1230-1231

2001

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Investigation of Genotypes of Borrelia burgdorferi in Ixodes scapularis Ticks Collected during Surveillance in Canada

Applied and Environmental Microbiology, 2011-05, Vol.77 (10), p.3244-3254

2011

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Combining Genome Surveillance and Metadata To Characterize the Diversity of Staphylococcus aureus Circulating in an Italian Hospital over a 9-Year Period

Microbiology spectrum, 2023-08, Vol.11 (4), p.e0101023-e0101023

2023

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Orphans as taxonomically restricted and ecologically important genes

Microbiology (Society for General Microbiology), 2005-08, Vol.151 (Pt 8), p.2499

2005

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The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis

Molecular biology and evolution, 1999-11, Vol.16 (11), p.1496-1502

1999

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Carried Meningococci in the Czech Republic: a Diverse Recombining Population

Journal of Clinical Microbiology, 2000-12, Vol.38 (12), p.4492-4498

2000

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Investigation of the Population Structure of the Tick Vector of Lyme Disease Ixodes scapularis (Acari: Ixodidae) in Canada using Mitochondrial Cytochrome C Oxidase Subunit I Gene Sequences

Journal of medical entomology, 2013-05, Vol.50 (3), p.560-570

2013

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Predominance of the Hungarian clone (ST 239-III) among hospital-acquired meticillin-resistant Staphylococcus aureus isolates recovered throughout mainland China

The Journal of hospital infection, 2009-03, Vol.71 (3), p.245-255

2009

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eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data

Journal of Bacteriology, 2004-03, Vol.186 (5), p.1518-1530

2004

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The Evolutionary History of Methicillin-Resistant Staphylococcus aureus (MRSA)

Proceedings of the National Academy of Sciences - PNAS, 2002-05, Vol.99 (11), p.7687-7692

2002

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Complex population structure of Borrelia burgdorferi in southeastern and south central Canada as revealed by phylogeographic analysis

Applied and Environmental Microbiology, 2015-02, Vol.81 (4), p.1309-1318

2015

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Comparisons of dN/dS are time dependent for closely related bacterial genomes

Journal of theoretical biology, 2006-03, Vol.239 (2), p.226-235

2006

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How Clonal Is Staphylococcus aureus?

Journal of Bacteriology, 2003-06, Vol.185 (11), p.3307-3316

2003

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Evolutionary aspects of emerging Lyme disease in Canada

Applied and Environmental Microbiology, 2015-11, Vol.81 (21), p.7350-7359

2015

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A Link between Virulence and Ecological Abundance in Natural Populations of Staphylococcus aureus

Science (American Association for the Advancement of Science), 2001-04, Vol.292 (5514), p.114-116

2001

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Characterization of Encapsulated and Noncapsulated Haemophilus influenzae and Determination of Phylogenetic Relationships by Multilocus Sequence Typing

Journal of Clinical Microbiology, 2003-04, Vol.41 (4), p.1623-1636

2003

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Multilocus sequence typing--what is resolved?

Trends in microbiology (Regular ed.), 2004-08, Vol.12 (8), p.373-377

2004

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Estimating the relative contributions of mutation and recombination to clonal diversification : a comparison between Neisseria meningitidis and Streptococcus pneumoniae

Research in microbiology, 2000-07, Vol.151 (6), p.465-469

2000

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Recombination within Natural Populations of Pathogenic Bacteria: Short-Term Empirical Estimates and Long-Term Phylogenetic Consequences

Proceedings of the National Academy of Sciences - PNAS, 2001-01, Vol.98 (1), p.182-187

2001

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Analyses of clonality and the evolution of bacterial pathogens

Current opinion in microbiology, 2004-06, Vol.7 (3), p.308-313

2004

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Displaying the relatedness among isolates of bacterial species – the eBURST approach

FEMS microbiology letters, 2004-12, Vol.241 (2), p.129-134

2004

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Estimating Recombinational Parameters in Streptococcus pneumoniae From Multilocus Sequence Typing Data

Genetics (Austin), 2000-04, Vol.154 (4), p.1439-1450

2000

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Population structure and evolutionary dynamics of pathogenic bacteria

BioEssays, 2000-12, Vol.22 (12), p.1115-1122

2000

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Determining the Genetic Structure of the Natural Population of Staphylococcus aureus: a Comparison of Multilocus Sequence Typing with Pulsed-Field Gel Electrophoresis, Randomly Amplified Polymorphic DNA Analysis, and Phage Typing

Journal of Clinical Microbiology, 2002-12, Vol.40 (12), p.4544-4546

2002

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The relative contributions of recombination and point mutation to the diversification of bacterial clones

Current Opinion in Microbiology, 2001-10, Vol.4 (5), p.602-606

2001

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