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A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites

Bioinformatics, 2011-10, Vol.27 (19), p.2621-2624

2011

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Role of structural water for prediction of cation binding sites in apoproteins

Journal of biomolecular structure & dynamics, 2018-01, Vol.36 (1), p.221-232

2018

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"Co-phased blocks"--conservative regions of double-stranded DNA of transcriptional regulatory modules--are close in space due to phasing at nucleosome DNA super helix

Biofizika, 2015-01, Vol.60 (1), p.15

2015

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General theory of the long-range interactions in protein folding

Physics letters. A, 2011-07, Vol.375 (32), p.2911-2915

2011

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Mutual disposition of nucleosomes and exons differs from common genome pattern at DNA segments containing periodic nucleotide sequences

Biofizika, 2013-11, Vol.58 (6), p.1081

2013

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Disallowed conformations of polypeptide chain exemplified by the β-bend of the β-hairpin in the α-spectrin CH3-domain

Biofizika, 2015-01, Vol.60 (1), p.5

2015

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The Intramolecular Impact to the Sequence Specificity of B→A Transition: Low Energy Conformational Variations in AA/TT and GG/CC Steps

Journal of biomolecular structure & dynamics, 2010-04, Vol.27 (5), p.677-693

2010

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Classification of amino acids based on a comparative analysis of contacts in DNA-protein complexes and specific DNA-protein interactions

Biofizika, 2013-11, Vol.58 (6), p.975

2013

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The Refinement of the Parameters of β-Turns Using Neutron Diffraction Data

Biophysics (Oxford), 2023-12, Vol.68 (6), p.945-951

2023

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Conformationally stable segments in helical structures of polypeptide chains of proteins and their role in high level structures formation

Biofizika, 2013-11, Vol.58 (6), p.1069

2013

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DNA sequencing using specific long-range interaction between macromolecules

Biofizika, 2012-11, Vol.57 (6), p.925

2012

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Alanine: The Usual and the Unexpected

Biophysics (Oxford), 2023-04, Vol.68 (2), p.153-156

2023

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Interconnection between architecture of protein globule and disposition of conformational conservative oligopeptides in proteins from one protein family

Biofizika, 2012-11, Vol.57 (6), p.1062

2012

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Conserved sections of the transcription regulatory modules in Drosophila early genes, including homotypic transcription factor-binding sites, are arranged with an 84-nt period, which corresponds to the superhelical turn length of nucleosomal DNA

Biophysics (Oxford), 2016, Vol.61 (1), p.43-46

2016

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Conserved double-stranded DNA regions (“cophased blocks”) of transcriptional regulatory modules are close in space due to phasing relative to the nucleosome DNA superhelix

Biophysics (Oxford), 2015, Vol.60 (1), p.10-12

2015

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Conformational Aspects in the Formation of Structures of the Backbone of Polypeptide Chains in Proteins: the Relationship between Conformational Stability/Lability and β-Turns

Biophysics (Oxford), 2023-02, Vol.68 (1), p.1-5

2023

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Natural polypeptides in left-handed helical conformation A circular dichroism study of the linker histones’ C-terminal fragments and β-endorphin

FEBS letters, 1992-07, Vol.306 (1), p.63-65

1992

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Contact specificity in protein-DNA complexes

Kompʹûternye issledovaniâ i modelirovanie (Online), 2009-09, Vol.1 (3), p.281-286

2009

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Levels of the Hierarchical Organization of Protein Sequences: An Analysis of Entropy Characteristics

Biophysics (Oxford), 2020, Vol.65 (6), p.907-912

2020

Volltextzugriff (PDF)

The specificity in promoter recognition by the Bacillus subtilis RNA polymerase deltaA and deltaH holoenzymes is connected with periodicities in the promoter nucleotide sequences

Biofizika, 2007-11, Vol.52 (6), p.965

2007

Volltextzugriff (PDF)

Large-Scale Periodicities in the Nucleotide Sequences of Drosophila Early Developmental Gene Loci

Biophysics (Oxford), 2017-11, Vol.62 (6), p.1030-1032

2017

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Third type of secondary structure: Noncooperative mobile conformation. Protein Data Bank analysis

Biochemical and biophysical research communications, 1987-08, Vol.146 (3), p.934-938

1987

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Left helix of polyproline II type and genesis of beta-structures in spidroins 1 and 2 and their recombinant analogs

Biofizika, 2009-05, Vol.54 (3), p.389

2009

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Molecular Modelling of Disease-Causing Single-Nucleotide Polymorphisms in Collagen

SAR and QSAR in environmental research, 2001-01, Vol.12 (4), p.383-399

2001

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The Conformational Stability/Lability of Peptide Fragments in the Sequence Context of Amino Acids

Biophysics (Oxford), 2019-03, Vol.64 (2), p.182-194

2019

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A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites

Role of structural water for prediction of cation binding sites in apoproteins

"Co-phased blocks"--conservative regions of double-stranded DNA of transcriptional regulatory modules--are close in space due to phasing at nucleosome DNA super helix

General theory of the long-range interactions in protein folding

Mutual disposition of nucleosomes and exons differs from common genome pattern at DNA segments containing periodic nucleotide sequences

Disallowed conformations of polypeptide chain exemplified by the β-bend of the β-hairpin in the α-spectrin CH3-domain

The Intramolecular Impact to the Sequence Specificity of B→A Transition: Low Energy Conformational Variations in AA/TT and GG/CC Steps

Classification of amino acids based on a comparative analysis of contacts in DNA-protein complexes and specific DNA-protein interactions

The Refinement of the Parameters of β-Turns Using Neutron Diffraction Data

Conformationally stable segments in helical structures of polypeptide chains of proteins and their role in high level structures formation

DNA sequencing using specific long-range interaction between macromolecules

Alanine: The Usual and the Unexpected

Interconnection between architecture of protein globule and disposition of conformational conservative oligopeptides in proteins from one protein family

Conserved sections of the transcription regulatory modules in Drosophila early genes, including homotypic transcription factor-binding sites, are arranged with an 84-nt period, which corresponds to the superhelical turn length of nucleosomal DNA

Conserved double-stranded DNA regions (“cophased blocks”) of transcriptional regulatory modules are close in space due to phasing relative to the nucleosome DNA superhelix

Conformational Aspects in the Formation of Structures of the Backbone of Polypeptide Chains in Proteins: the Relationship between Conformational Stability/Lability and β-Turns

Natural polypeptides in left-handed helical conformation A circular dichroism study of the linker histones’ C-terminal fragments and β-endorphin

Contact specificity in protein-DNA complexes

Levels of the Hierarchical Organization of Protein Sequences: An Analysis of Entropy Characteristics

The specificity in promoter recognition by the Bacillus subtilis RNA polymerase deltaA and deltaH holoenzymes is connected with periodicities in the promoter nucleotide sequences

Large-Scale Periodicities in the Nucleotide Sequences of Drosophila Early Developmental Gene Loci

Third type of secondary structure: Noncooperative mobile conformation. Protein Data Bank analysis

Left helix of polyproline II type and genesis of beta-structures in spidroins 1 and 2 and their recombinant analogs

Molecular Modelling of Disease-Causing Single-Nucleotide Polymorphisms in Collagen

The Conformational Stability/Lability of Peptide Fragments in the Sequence Context of Amino Acids

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