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Defining HIV-1 transmission clusters based on sequence data

AIDS (London), 2017-06, Vol.31 (9), p.1211-1222

2017

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The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review

Viruses, 2021-06, Vol.13 (6), p.1174

2021

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HIV-1 subtype diversity, transmission networks and transmitted drug resistance amongst acute and early infected MSM populations from Coastal Kenya

PloS one, 2018-12, Vol.13 (12), p.e0206177-e0206177

2018

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Phylogenetic Characterization of HIV-1 Sub-Subtype A1 in Karachi, Pakistan

Viruses, 2022-10, Vol.14 (10), p.2307

2022

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Intra-Patient Evolution of HIV-2 Molecular Properties

Viruses, 2022-11, Vol.14 (11), p.2447

2022

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HIV-1 molecular epidemiology in Guinea-Bissau, West Africa: origin, demography and migrations

PloS one, 2011-02, Vol.6 (2), p.e17025-e17025

2011

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Prevalence of HIV-1 pretreatment drug resistance among treatment naïve pregnant women in Bissau, Guinea Bissau

PloS one, 2018-10, Vol.13 (10), p.e0206406-e0206406

2018

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TRIM22 genotype is not associated with markers of disease progression in children with HIV-1 infection

AIDS (London), 2021-12, Vol.35 (15), p.2445-2450

2021

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Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma

Journal of virology, 2019-01, Vol.93 (1)

2019

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A Stronger Innate Immune Response During Hyperacute Human Immunodeficiency Virus Type 1 (HIV-1) Infection Is Associated With Acute Retroviral Syndrome

Clinical infectious diseases, 2021-09, Vol.73 (5), p.832-841

2021

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Inverted CD8 T-Cell Exhaustion and Co-Stimulation Marker Balance Differentiate Aviremic HIV-2-Infected From Seronegative Individuals

Frontiers in immunology, 2021-10, Vol.12, p.744530-744530

2021

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Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein

PloS one, 2018-12, Vol.13 (12), p.e0209292-e0209292

2018

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Temporal trends and transmission dynamics of pre-treatment HIV-1 drug resistance within and between risk groups in Kenya, 1986–2020

Journal of antimicrobial chemotherapy, 2024-02, Vol.79 (2), p.287-296

2024

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Phylogeographic Assessment Reveals Geographic Sources of HIV-1 Dissemination Among Men Who Have Sex With Men in Kenya

Frontiers in microbiology, 2022-03, Vol.13, p.843330

2022

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HIV-2 as a model to identify a functional HIV cure

AIDS research and therapy, 2019-09, Vol.16 (1), p.24-12, Article 24

2019

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Increase in transmitted drug resistance in migrants from sub-Saharan Africa diagnosed with HIV-1 in Sweden

AIDS (London), 2018-04, Vol.32 (7), p.877-884

2018

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Cross-Reactive Antibodies With the Capacity to Mediate HIV-1 Envelope Glycoprotein–Targeted Antibody-Dependent Cellular Cytotoxicity Identified in HIV-2–Infected Individuals

The Journal of infectious diseases, 2019-05, Vol.219 (11), p.1749-1754

2019

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The HIV care continuum and HIV-1 drug resistance among female sex workers: a key population in Guinea-Bissau

AIDS research and therapy, 2020-06, Vol.17 (1), p.33-11, Article 33

2020

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HIV-2 mediated effects on target and bystander cells induce plasma proteome remodeling

iScience, 2024-04, Vol.27 (4), p.109344-109344, Article 109344

2024

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Interferon Alpha-Inducible Protein 27 Expression Is Linked to Disease Severity in Chronic Infection of Both HIV-1 and HIV-2

Frontiers in virology (online), 2022-06, Vol.2

2022

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Potent Intratype Neutralizing Activity Distinguishes Human Immunodeficiency Virus Type 2 (HIV-2) from HIV-1

Journal of Virology, 2012-01, Vol.86 (2), p.961-971

2012

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Long-term follow-up of HIV-2-related AIDS and mortality in Guinea-Bissau: a prospective open cohort study

The lancet HIV, 2019-01, Vol.6 (1), p.e25-e31

2019

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Effect of HIV-2 Infection on HIV-1 Disease Progression REPLY

The New England journal of medicine, 2012-11, Vol.367 (20), p.1962

2012

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Molecular epidemiology of HIV-1 in Iceland: Early introductions, transmission dynamics and recent outbreaks among injection drug users

Infection, genetics and evolution, 2017-04, Vol.49, p.157-163

2017

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Hierarchical Clustering and Trajectory Analyses Reveal Viremia-Independent B-Cell Perturbations in HIV-2 Infection

Cells (Basel, Switzerland), 2022-10, Vol.11 (19), p.3142

2022

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Defining HIV-1 transmission clusters based on sequence data

The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review

HIV-1 subtype diversity, transmission networks and transmitted drug resistance amongst acute and early infected MSM populations from Coastal Kenya

Phylogenetic Characterization of HIV-1 Sub-Subtype A1 in Karachi, Pakistan

Intra-Patient Evolution of HIV-2 Molecular Properties

HIV-1 molecular epidemiology in Guinea-Bissau, West Africa: origin, demography and migrations

Prevalence of HIV-1 pretreatment drug resistance among treatment naïve pregnant women in Bissau, Guinea Bissau

TRIM22 genotype is not associated with markers of disease progression in children with HIV-1 infection

Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma

A Stronger Innate Immune Response During Hyperacute Human Immunodeficiency Virus Type 1 (HIV-1) Infection Is Associated With Acute Retroviral Syndrome

Inverted CD8 T-Cell Exhaustion and Co-Stimulation Marker Balance Differentiate Aviremic HIV-2-Infected From Seronegative Individuals

Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein

Temporal trends and transmission dynamics of pre-treatment HIV-1 drug resistance within and between risk groups in Kenya, 1986–2020

Phylogeographic Assessment Reveals Geographic Sources of HIV-1 Dissemination Among Men Who Have Sex With Men in Kenya

HIV-2 as a model to identify a functional HIV cure

Increase in transmitted drug resistance in migrants from sub-Saharan Africa diagnosed with HIV-1 in Sweden

Cross-Reactive Antibodies With the Capacity to Mediate HIV-1 Envelope Glycoprotein–Targeted Antibody-Dependent Cellular Cytotoxicity Identified in HIV-2–Infected Individuals

The HIV care continuum and HIV-1 drug resistance among female sex workers: a key population in Guinea-Bissau

HIV-2 mediated effects on target and bystander cells induce plasma proteome remodeling

Interferon Alpha-Inducible Protein 27 Expression Is Linked to Disease Severity in Chronic Infection of Both HIV-1 and HIV-2

Potent Intratype Neutralizing Activity Distinguishes Human Immunodeficiency Virus Type 2 (HIV-2) from HIV-1

Long-term follow-up of HIV-2-related AIDS and mortality in Guinea-Bissau: a prospective open cohort study

Effect of HIV-2 Infection on HIV-1 Disease Progression REPLY

Molecular epidemiology of HIV-1 in Iceland: Early introductions, transmission dynamics and recent outbreaks among injection drug users

Hierarchical Clustering and Trajectory Analyses Reveal Viremia-Independent B-Cell Perturbations in HIV-2 Infection

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