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Spaceflight Modifies Escherichia coli Gene Expression in Response to Antibiotic Exposure and Reveals Role of Oxidative Stress Response

Frontiers in microbiology, 2018-03, Vol.9, p.310-310

2018

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CONSTRICTOR: constraint modification provides insight into design of biochemical networks

PloS one, 2014-11, Vol.9 (11), p.e113820-e113820

2014

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Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

PLoS computational biology, 2019-01, Vol.15 (1), p.e1006706-e1006706

2019

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Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling

Cell systems, 2018-08, Vol.7 (2), p.161-179.e14

2018

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Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli

Proceedings of the National Academy of Sciences - PNAS, 2020-12, Vol.117 (48), p.30699-30709

2020

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Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution

mSphere, 2017-01, Vol.2 (1)

2017

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Potentiating antibiotic efficacy via perturbation of non-essential gene expression

Communications biology, 2021-11, Vol.4 (1), p.1267-15, Article 1267

2021

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Facile accelerated specific therapeutic (FAST) platform develops antisense therapies to counter multidrug-resistant bacteria

Communications biology, 2021-03, Vol.4 (1), p.331-13, Article 331

2021

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New insights into RAS biology reinvigorate interest in mathematical modeling of RAS signaling

Seminars in cancer biology, 2019-02, Vol.54, p.162-173

2019

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Generalizing Gillespie’s Direct Method to Enable Network-Free Simulations

Bulletin of mathematical biology, 2019-08, Vol.81 (8), p.2822-2848

2019

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ROS mediated selection for increased NADPH availability in Escherichia coli

Biotechnology and bioengineering, 2017-11, Vol.114 (11), p.2685-2689

2017

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CRISPR Perturbation of Gene Expression Alters Bacterial Fitness under Stress and Reveals Underlying Epistatic Constraints

ACS synthetic biology, 2017-01, Vol.6 (1), p.94-107

2017

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The Tolerome: A Database of Transcriptome-Level Contributions to Diverse Escherichia coli Resistance and Tolerance Phenotypes

ACS synthetic biology, 2017-12, Vol.6 (12), p.2302-2315

2017

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Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial Populations

ACS infectious diseases, 2015-11, Vol.1 (11), p.555-567

2015

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Draft Genome Sequences of Clinical Isolates of Multidrug-Resistant Acinetobacter baumannii

Genome announcements (Washington, DC), 2017-02, Vol.5 (5)

2017

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The Resistome: A Comprehensive Database of Escherichia coli Resistance Phenotypes

ACS synthetic biology, 2016-12, Vol.5 (12), p.1566-1577

2016

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Draft Genome Sequence for a Clinical Isolate of Vancomycin-Resistant Enterococcus faecalis

Genome announcements (Washington, DC), 2016-06, Vol.4 (3)

2016

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Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling

Cell systems, 2018-08, Vol.7 (2)

2018

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Spaceflight Modifies Escherichia coli Gene Expression in Response to Antibiotic Exposure and Reveals Role of Oxidative Stress Response

CONSTRICTOR: constraint modification provides insight into design of biochemical networks

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling

Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli

Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution

Potentiating antibiotic efficacy via perturbation of non-essential gene expression

Facile accelerated specific therapeutic (FAST) platform develops antisense therapies to counter multidrug-resistant bacteria

New insights into RAS biology reinvigorate interest in mathematical modeling of RAS signaling

Generalizing Gillespie’s Direct Method to Enable Network-Free Simulations

ROS mediated selection for increased NADPH availability in Escherichia coli

CRISPR Perturbation of Gene Expression Alters Bacterial Fitness under Stress and Reveals Underlying Epistatic Constraints

The Tolerome: A Database of Transcriptome-Level Contributions to Diverse Escherichia coli Resistance and Tolerance Phenotypes

Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial Populations

Draft Genome Sequences of Clinical Isolates of Multidrug-Resistant Acinetobacter baumannii

The Resistome: A Comprehensive Database of Escherichia coli Resistance Phenotypes

Draft Genome Sequence for a Clinical Isolate of Vancomycin-Resistant Enterococcus faecalis

Dissecting RAF Inhibitor Resistance by Structure-based Modeling Reveals Ways to Overcome Oncogenic RAS Signaling

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