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Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes

Proceedings of the National Academy of Sciences - PNAS, 2019-02, Vol.116 (6), p.2165-2174

2019

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The alternative reality of plant mitochondrial DNA: One ring does not rule them all

PLoS genetics, 2019-08, Vol.15 (8), p.e1008373-e1008373

2019

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Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model

Current opinion in plant biology, 2012-04, Vol.15 (2), p.147-153

2012

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Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

The Plant cell, 2017-06, Vol.29 (6), p.1278-1292

2017

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GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

eLife, 2022-09, Vol.11

2022

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Whole-genome microsynteny-based phylogeny of angiosperms

Nature communications, 2021-06, Vol.12 (1), p.3498-3498, Article 3498

2021

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Origins and geographic diversification of African rice (Oryza glaberrima)

PloS one, 2019-03, Vol.14 (3), p.e0203508-e0203508

2019

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Network approaches for plant phylogenomic synteny analysis

Current opinion in plant biology, 2017-04, Vol.36, p.129-134

2017

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Comparative paleogenomics of crucifers: ancestral genomic blocks revisited

Current opinion in plant biology, 2016-04, Vol.30, p.108-115

2016

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Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress

Plant physiology (Bethesda), 2016-10, Vol.172 (2), p.668-689

2016

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butterfly plant arms-race escalated by gene and genome duplications

Proceedings of the National Academy of Sciences - PNAS, 2015-07, Vol.112 (27), p.8362-8366

2015

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The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes

Trends in plant science, 2006-11, Vol.11 (11), p.535-542

2006

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The membrane associated NAC transcription factors ANAC060 and ANAC040 are functionally redundant in the inhibition of seed dormancy in Arabidopsis thaliana

Journal of experimental botany, 2022-09, Vol.73 (16), p.5514-5528

2022

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Phenotypic variation in biomass and related traits among four generations advanced lines of Cleome (Gynandropsis gynandra L. (Briq.))

PloS one, 2022-10, Vol.17 (10), p.e0275829-e0275829

2022

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Identifying and Engineering Genes for Parthenogenesis in Plants

Frontiers in plant science, 2019-02, Vol.10, p.128-128

2019

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Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008318-e1008318

2020

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Whole-genome duplications followed by tandem duplications drive diversification of the protein modifier SUMO in Angiosperms

The New phytologist, 2016-07, Vol.211 (1), p.172-185

2016

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Nicotinate O-Glucosylation Is an Evolutionarily Metabolic Trait Important for Seed Germination under Stress Conditions in Arabidopsis thaliana

The Plant cell, 2015-07, Vol.27 (7), p.1907-1924

2015

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Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses

American journal of botany, 2018-03, Vol.105 (3), p.463-469

2018

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A rapid method to quantify vein density in C4 plants using starch staining

Plant, cell and environment, 2023-09, Vol.46 (9), p.2928-2938

2023

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Genomic Architecture and Evolution of the Cellulose synthase Gene Superfamily as Revealed by Phylogenomic Analysis

Frontiers in plant science, 2022-04, Vol.13, p.870818-870818

2022

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A Gain-of-Function Polymorphism Controlling Complex Traits and Fitness in Nature

Science (American Association for the Advancement of Science), 2012-08, Vol.337 (6098), p.1081-1084

2012

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Efficient inference of homologs in large eukaryotic pan-proteomes

BMC bioinformatics, 2018-09, Vol.19 (1), p.340-340, Article 340

2018

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Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota

Science China. Life sciences, 2019-07, Vol.62 (7), p.947-958

2019

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Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

Whole-genome microsynteny-based phylogeny of angiosperms

Origins and geographic diversification of African rice (Oryza glaberrima)

Network approaches for plant phylogenomic synteny analysis

Comparative paleogenomics of crucifers: ancestral genomic blocks revisited

Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress

butterfly plant arms-race escalated by gene and genome duplications

The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes

The membrane associated NAC transcription factors ANAC060 and ANAC040 are functionally redundant in the inhibition of seed dormancy in Arabidopsis thaliana

Phenotypic variation in biomass and related traits among four generations advanced lines of Cleome (Gynandropsis gynandra L. (Briq.))

Identifying and Engineering Genes for Parthenogenesis in Plants

Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin

Whole-genome duplications followed by tandem duplications drive diversification of the protein modifier SUMO in Angiosperms

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

Nicotinate O-Glucosylation Is an Evolutionarily Metabolic Trait Important for Seed Germination under Stress Conditions in Arabidopsis thaliana

Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses

A rapid method to quantify vein density in C4 plants using starch staining

Genomic Architecture and Evolution of the Cellulose synthase Gene Superfamily as Revealed by Phylogenomic Analysis

A Gain-of-Function Polymorphism Controlling Complex Traits and Fitness in Nature

Efficient inference of homologs in large eukaryotic pan-proteomes

Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota

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