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Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense

The New phytologist, 2014-02, Vol.201 (3), p.850-861

2014

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Abscisic Acid Is a Major Regulator of Grape Berry Ripening Onset: New Insights into ABA Signaling Network

Frontiers in plant science, 2017-06, Vol.8, p.1093-1093

2017

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Transcriptome Profiles of Strawberry (Fragaria vesca) Fruit Interacting With Botrytis cinerea at Different Ripening Stages

Frontiers in plant science, 2019-09, Vol.10, p.1131-1131

2019

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PulmonDB: a curated lung disease gene expression database

Scientific reports, 2020-01, Vol.10 (1), p.514-514, Article 514

2020

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Dual Transcriptome and Metabolic Analysis of Vitis vinifera cv. Pinot Noir Berry and Botrytis cinerea During Quiescence and Egressed Infection

Frontiers in plant science, 2020-01, Vol.10, p.1704-1704

2020

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First step toward gene expression data integration: transcriptomic data acquisition with COMMAND

BMC bioinformatics, 2019-01, Vol.20 (1), p.54-54, Article 54

2019

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A COMPASS for VESPUCCI: A FAIR Way to Explore the Grapevine Transcriptomic Landscape

Frontiers in plant science, 2022-02, Vol.13, p.815443-815443

2022

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Using ribosomal protein genes as reference: a tale of caution

PloS one, 2008-03, Vol.3 (3), p.e1854-e1854

2008

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Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

PLoS computational biology, 2015-09, Vol.11 (9), p.e1004478-e1004478

2015

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Structural properties of prokaryotic promoter regions correlate with functional features

PloS one, 2014-02, Vol.9 (2), p.e88717-e88717

2014

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Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli

Genome biology, 2011-02, Vol.12 (2), p.R17-R17, Article R17

2011

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Ethylene-auxin crosstalk regulates postharvest fruit ripening process in apple

Fruit research, 2021, Vol.1 (1), p.1-13

2021

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PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability

Molecular microbiology, 2005-02, Vol.55 (3), p.862-880

2005

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A Comparative Transcriptome Analysis of Rhizobium etli Bacteroids: Specific Gene Expression During Symbiotic Nongrowth

Molecular plant-microbe interactions, 2011-12, Vol.24 (12), p.1553-1561

2011

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Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

BMC genomics, 2010-01, Vol.11 (1), p.53-53, Article 53

2010

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The Effect of a Sertoli Cell-Selective Knockout of the Androgen Receptor on Testicular Gene Expression in Prepubertal Mice

Molecular endocrinology (Baltimore, Md.), 2006-02, Vol.20 (2), p.321-334

2006

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COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms

Nucleic acids research, 2011-04, Vol.39 (7), p.e41-e41

2011

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COLOMBOS: access port for cross-platform bacterial expression compendia

PloS one, 2011-07, Vol.6 (7), p.e20938-e20938

2011

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DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

Genome biology, 2009-03, Vol.10 (3), p.R27-R27, Article R27

2009

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DNA Structural Properties in the Classification of Genomic Transcription Regulation Elements

Bioinformatics and Biology Insights, 2012-01, Vol.2012 (6), p.155-168

2012

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Delineation of the Salmonella enterica Serovar Typhimurium HilA Regulon through Genome-Wide Location and Transcript Analysis

Journal of Bacteriology, 2007-07, Vol.189 (13), p.4587-4596

2007

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COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia: Table 1

Nucleic acids research, 2014-01, Vol.42 (D1), p.D649-D653

2014

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Practical Approaches for Mining Frequent Patterns in Molecular Datasets

Bioinformatics and Biology Insights, 2016-01, Vol.2016 (10), p.37-47

2016

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Identifying Common Structural DNA Properties in Transcription Factor Binding Site Sets of the LacI-GalR Family

Current bioinformatics, 2013-09, Vol.8 (4), p.483-488

2013

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Inferring the transcriptional network of Bacillus subtilis

Molecular bioSystems, 2009-01, Vol.5 (12), p.1840-1852

2009

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Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense

Abscisic Acid Is a Major Regulator of Grape Berry Ripening Onset: New Insights into ABA Signaling Network

Transcriptome Profiles of Strawberry (Fragaria vesca) Fruit Interacting With Botrytis cinerea at Different Ripening Stages

PulmonDB: a curated lung disease gene expression database

Dual Transcriptome and Metabolic Analysis of Vitis vinifera cv. Pinot Noir Berry and Botrytis cinerea During Quiescence and Egressed Infection

First step toward gene expression data integration: transcriptomic data acquisition with COMMAND

A COMPASS for VESPUCCI: A FAIR Way to Explore the Grapevine Transcriptomic Landscape

Using ribosomal protein genes as reference: a tale of caution

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

Structural properties of prokaryotic promoter regions correlate with functional features

Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli

Ethylene-auxin crosstalk regulates postharvest fruit ripening process in apple

PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability

A Comparative Transcriptome Analysis of Rhizobium etli Bacteroids: Specific Gene Expression During Symbiotic Nongrowth

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

The Effect of a Sertoli Cell-Selective Knockout of the Androgen Receptor on Testicular Gene Expression in Prepubertal Mice

COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms

COLOMBOS: access port for cross-platform bacterial expression compendia

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

DNA Structural Properties in the Classification of Genomic Transcription Regulation Elements

Delineation of the Salmonella enterica Serovar Typhimurium HilA Regulon through Genome-Wide Location and Transcript Analysis

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia: Table 1

Practical Approaches for Mining Frequent Patterns in Molecular Datasets

Identifying Common Structural DNA Properties in Transcription Factor Binding Site Sets of the LacI-GalR Family

Inferring the transcriptional network of Bacillus subtilis

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