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Bacterial chemotaxis: information processing, thermodynamics, and behavior

Current opinion in microbiology, 2016-04, Vol.30, p.8-15

2016

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Growth-rate dependent resource investment in bacterial motile behavior quantitatively follows potential benefit of chemotaxis

Proceedings of the National Academy of Sciences - PNAS, 2020-01, Vol.117 (1), p.595-601

2020

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Of Cell Shapes and Motion: The Physical Basis of Animal Cell Migration

Developmental cell, 2020-03, Vol.52 (5), p.550-562

2020

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Target shape dependence in a simple model of receptor-mediated endocytosis and phagocytosis

Proceedings of the National Academy of Sciences - PNAS, 2016-05, Vol.113 (22), p.6113-6118

2016

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The Mechanism of Phagocytosis: Two Stages of Engulfment

Biophysical journal, 2014-10, Vol.107 (7), p.1542-1553

2014

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How cells engulf: a review of theoretical approaches to phagocytosis

Reports on progress in physics, 2017-12, Vol.80 (12), p.126601-126601

2017

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Thermodynamic constraints on the assembly and diversity of microbial ecosystems are different near to and far from equilibrium

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009643-e1009643

2021

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Effectiveness of Pseudomonas aeruginosa type VI secretion system relies on toxin potency and type IV pili-dependent interaction

PLoS pathogens, 2023-05, Vol.19 (5), p.e1011428

2023

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Accuracy of direct gradient sensing by single cells

Proceedings of the National Academy of Sciences - PNAS, 2008-10, Vol.105 (41), p.15749-15754

2008

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A critical-like collective state leads to long-range cell communication in Dictyostelium discoideum aggregation

PLoS biology, 2017-04, Vol.15 (4), p.e1002602-e1002602

2017

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Physics-informed deep learning characterizes morphodynamics of Asian soybean rust disease

Nature communications, 2021-11, Vol.12 (1), p.6424-9, Article 6424

2021

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Subversion of trafficking, apoptosis, and innate immunity by type III secretion system effectors

Trends in microbiology (Regular ed.), 2013-08, Vol.21 (8), p.430-441

2013

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Persistent and polarized global actin flow is essential for directionality during cell migration

Nature cell biology, 2019-11, Vol.21 (11), p.1370-1381

2019

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Unraveling biochemical spatial patterns: Machine learning approaches to the inverse problem of stationary Turing patterns

iScience, 2024-06, Vol.27 (6), p.109822-109822, Article 109822

2024

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Bistability: requirements on cell-volume, protein diffusion, and thermodynamics

PloS one, 2015-04, Vol.10 (4), p.e0121681-e0121681

2015

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Entropy production selects nonequilibrium states in multistable systems

Scientific reports, 2017-10, Vol.7 (1), p.14437-13, Article 14437

Endres, Robert G

2017

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Cell-wall remodeling drives engulfment during Bacillus subtilis sporulation

eLife, 2016-11, Vol.5

2016

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Predicting chemical environments of bacteria from receptor signaling

PLoS computational biology, 2014-10, Vol.10 (10), p.e1003870-e1003870

2014

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Unraveling adaptation in eukaryotic pathways: lessons from protocells

PLoS computational biology, 2013-10, Vol.9 (10), p.e1003300-e1003300

2013

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Precise Adaptation in Bacterial Chemotaxis through "Assistance Neighborhoods"

Proceedings of the National Academy of Sciences - PNAS, 2006-08, Vol.103 (35), p.13040-13044

2006

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Protein Connectivity in Chemotaxis Receptor Complexes

PLoS computational biology, 2015-12, Vol.11 (12), p.e1004650-e1004650

2015

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Accurate encoding and decoding by single cells: amplitude versus frequency modulation

PLoS computational biology, 2015-06, Vol.11 (6), p.e1004222-e1004222

2015

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Shared behavioral mechanisms underlie C. elegans aggregation and swarming

eLife, 2019-04, Vol.8

2019

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Bistable forespore engulfment in Bacillus subtilis by a zipper mechanism in absence of the cell wall

PLoS computational biology, 2014-10, Vol.10 (10), p.e1003912-e1003912

2014

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Signaling Crosstalk: New Insights Require New Vocabulary

Biophysical journal, 2012-12, Vol.103 (11), p.2241-2242

Endres, Robert G.

2012

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Bacterial chemotaxis: information processing, thermodynamics, and behavior

Growth-rate dependent resource investment in bacterial motile behavior quantitatively follows potential benefit of chemotaxis

Of Cell Shapes and Motion: The Physical Basis of Animal Cell Migration

Target shape dependence in a simple model of receptor-mediated endocytosis and phagocytosis

The Mechanism of Phagocytosis: Two Stages of Engulfment

How cells engulf: a review of theoretical approaches to phagocytosis

Thermodynamic constraints on the assembly and diversity of microbial ecosystems are different near to and far from equilibrium

Effectiveness of Pseudomonas aeruginosa type VI secretion system relies on toxin potency and type IV pili-dependent interaction

Accuracy of direct gradient sensing by single cells

A critical-like collective state leads to long-range cell communication in Dictyostelium discoideum aggregation

Physics-informed deep learning characterizes morphodynamics of Asian soybean rust disease

Subversion of trafficking, apoptosis, and innate immunity by type III secretion system effectors

Persistent and polarized global actin flow is essential for directionality during cell migration

Unraveling biochemical spatial patterns: Machine learning approaches to the inverse problem of stationary Turing patterns

Bistability: requirements on cell-volume, protein diffusion, and thermodynamics

Entropy production selects nonequilibrium states in multistable systems

Cell-wall remodeling drives engulfment during Bacillus subtilis sporulation

Predicting chemical environments of bacteria from receptor signaling

Unraveling adaptation in eukaryotic pathways: lessons from protocells

Precise Adaptation in Bacterial Chemotaxis through "Assistance Neighborhoods"

Protein Connectivity in Chemotaxis Receptor Complexes

Accurate encoding and decoding by single cells: amplitude versus frequency modulation

Shared behavioral mechanisms underlie C. elegans aggregation and swarming

Bistable forespore engulfment in Bacillus subtilis by a zipper mechanism in absence of the cell wall

Signaling Crosstalk: New Insights Require New Vocabulary

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