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OrthoFinder: phylogenetic orthology inference for comparative genomics

Genome Biology, 2019-11, Vol.20 (1), p.238-238, Article 238

2019

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OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

Genome Biology, 2015-08, Vol.16 (1), p.157-157, Article 157

2015

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STRIDE: Species Tree Root Inference from Gene Duplication Events

Molecular biology and evolution, 2017-12, Vol.34 (12), p.3267-3278

2017

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The Stepwise Increase in the Number of Transcription Factor Families in the Precambrian Predated the Diversification of Plants On Land

Molecular biology and evolution, 2016-11, Vol.33 (11), p.2815-2819

2016

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Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves

Scientific reports, 2020-12, Vol.10 (1), p.21547-21547, Article 21547

2020

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Agricultural Selection of Wheat Has Been Shaped by Plant-Microbe Interactions

Frontiers in microbiology, 2020-02, Vol.11, p.132-132

2020

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Rubisco is evolving for improved catalytic efficiency and CO2 assimilation in plants

Proceedings of the National Academy of Sciences - PNAS, 2024-03, Vol.121 (11), p.e2321050121-e2321050121

2024

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Rubisco is evolving for improved catalytic efficiency and CO 2 assimilation in plants

Proceedings of the National Academy of Sciences - PNAS, 2024-03, Vol.121 (11), p.e2321050121

2024

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Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species

Molecular biology and evolution, 2016-07, Vol.33 (7), p.1796-1806

2016

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Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench

Genome biology and evolution, 2020-12, Vol.12 (12), p.2258-2266

2020

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Multiple Metabolic Innovations and Losses Are Associated with Major Transitions in Land Plant Evolution

Current biology, 2020-05, Vol.30 (10), p.1783-1800.e11

2020

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Gene Duplication Accelerates the Pace of Protein Gain and Loss from Plant Organelles

Molecular biology and evolution, 2020-04, Vol.37 (4), p.969-981

2020

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NO GAMETOPHORES 2 Is a Novel Regulator of the 2D to 3D Growth Transition in the Moss Physcomitrella patens

Current biology, 2021-02, Vol.31 (3), p.555-563.e4

2021

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Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off

Molecular biology and evolution, 2021-07, Vol.38 (7), p.2880-2896

2021

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The Quest for Orthologs orthology benchmark service in 2022

Nucleic acids research, 2022-07, Vol.50 (W1), p.W623-W632

2022

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Conditional stomatal closure in a fern shares molecular features with flowering plant active stomatal responses

Current biology, 2021-10, Vol.31 (20), p.4560-4570.e5

2021

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Analysis of graph structure using quantum walks

Emms, David M

2007

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GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

eLife, 2022-09, Vol.11

2022

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The Quest for Orthologs benchmark service and consensus calls in 2020

Nucleic acids research, 2020-07, Vol.48 (W1), p.W538-W545

2020

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Oxythermal habitat as a primary driver of ecological niche and genetic diversity in cisco ( Coregonus artedi )

Canadian journal of fisheries and aquatic sciences, 2022-03, Vol.79 (3), p.503-517

2022

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Constructing continuum many countable, primitive, unbalanced digraphs

Discrete mathematics, 2009-07, Vol.309 (13), p.4475-4480

2009

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Graph Embedding Using Quantum Commute Times

Graph-Based Representations in Pattern Recognition, p.371-382

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The Future of Enterprise Security with Regards to Mobile Technology and Applications

Global Security, Safety and Sustainability - The Security Challenges of the Connected World, p.321-330

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Forensic Analysis of Secure Ephemeral Messaging Applications on Android Platforms

Global Security, Safety and Sustainability - The Security Challenges of the Connected World, p.27-41

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A Correspondence Measure for Graph Matching Using the Discrete Quantum Walk

Graph-Based Representations in Pattern Recognition, p.81-91

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OrthoFinder: phylogenetic orthology inference for comparative genomics

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

STRIDE: Species Tree Root Inference from Gene Duplication Events

The Stepwise Increase in the Number of Transcription Factor Families in the Precambrian Predated the Diversification of Plants On Land

Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves

Agricultural Selection of Wheat Has Been Shaped by Plant-Microbe Interactions

Rubisco is evolving for improved catalytic efficiency and CO2 assimilation in plants

Rubisco is evolving for improved catalytic efficiency and CO 2 assimilation in plants

Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species

Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench

Multiple Metabolic Innovations and Losses Are Associated with Major Transitions in Land Plant Evolution

Gene Duplication Accelerates the Pace of Protein Gain and Loss from Plant Organelles

NO GAMETOPHORES 2 Is a Novel Regulator of the 2D to 3D Growth Transition in the Moss Physcomitrella patens

Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off

The Quest for Orthologs orthology benchmark service in 2022

Conditional stomatal closure in a fern shares molecular features with flowering plant active stomatal responses

Analysis of graph structure using quantum walks

GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

The Quest for Orthologs benchmark service and consensus calls in 2020

Oxythermal habitat as a primary driver of ecological niche and genetic diversity in cisco ( Coregonus artedi )

Constructing continuum many countable, primitive, unbalanced digraphs

Graph Embedding Using Quantum Commute Times

The Future of Enterprise Security with Regards to Mobile Technology and Applications

Forensic Analysis of Secure Ephemeral Messaging Applications on Android Platforms

A Correspondence Measure for Graph Matching Using the Discrete Quantum Walk

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