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Detecting sequence signals in targeting peptides using deep learning

Life science alliance, 2019-10, Vol.2 (5), p.e201900429

2019

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Locating proteins in the cell using TargetP, SignalP and related tools

Nature protocols, 2007-04, Vol.2 (4), p.953-971

2007

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Sequencing degraded RNA addressed by 3' tag counting

PloS one, 2014-03, Vol.9 (3), p.e91851-e91851

2014

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ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs

BMC bioinformatics, 2024-02, Vol.25 (1), p.54-54, Article 54

2024

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Sorting signals, N-terminal modifications and abundance of the chloroplast proteome

PloS one, 2008-04, Vol.3 (4), p.e1994-e1994

2008

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What is a gene, post-ENCODE? History and updated definition

Genome research, 2007-06, Vol.17 (6), p.669-681

2007

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Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana

Nucleic acids research, 2017-04, Vol.45 (6), p.3253-3265

2017

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Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

Genome Research, 2007-06, Vol.17 (6), p.898-909

2007

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Central Functions of the Lumenal and Peripheral Thylakoid Proteome of Arabidopsis Determined by Experimentation and Genome-Wide Prediction

The Plant cell, 2002-01, Vol.14 (1), p.211-236

2002

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Nuclease-assisted suppression of human DNA background in sepsis

PloS one, 2014-07, Vol.9 (7), p.e103610-e103610

2014

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Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies

Frontiers in plant science, 2018, Vol.9, p.1625-1625

2018

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In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines

PloS one, 2010-03, Vol.5 (3), p.e9762-e9762

2010

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DNA Replication-Timing Analysis of Human Chromosome 22 at High Resolution and Different Developmental States

Proceedings of the National Academy of Sciences - PNAS, 2004-12, Vol.101 (51), p.17771-17776

2004

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Combined chromatin and expression analysis reveals specific regulatory mechanisms within cytokine genes in the macrophage early immune response

PloS one, 2012-02, Vol.7 (2), p.e32306-e32306

2012

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Analysis of transcript and protein overlap in a human osteosarcoma cell line

BMC genomics, 2010-12, Vol.11 (1), p.684-684, Article 684

2010

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Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties

Plant physiology (Bethesda), 2004-06, Vol.135 (2), p.723-734

2004

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Correction: Combined Chromatin and Expression Analysis Reveals Specific Regulatory Mechanisms within Cytokine Genes in the Macrophage Early Immune Response

PloS one, 2012-04, Vol.7 (4)

2012

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LumenP—A neural network predictor for protein localization in the thylakoid lumen

Protein science, 2003-10, Vol.12 (10), p.2360-2366

2003

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Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence

Journal of molecular biology, 2000-07, Vol.300 (4), p.1005-1016

2000

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Analysis of stranded information using an automated procedure for strand specific RNA sequencing

BMC genomics, 2014-07, Vol.15 (1), p.631-631, Article 631

2014

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Cone‐setting in spruce is regulated by conserved elements of the age‐dependent flowering pathway

The New phytologist, 2022-12, Vol.236 (5), p.1951-1963

2022

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ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

Protein science, 1999-05, Vol.8 (5), p.978-984

1999

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Predicting protein subcellular localisation from amino acid sequence information

Briefings in bioinformatics, 2002-12, Vol.3 (4), p.361-376

EMANUELSSON, Olof

2002

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GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information

Scientific reports, 2016-02, Vol.6 (1), p.21134-21134, Article 21134

2016

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Prediction of organellar targeting signals

BBA - Molecular Cell Research, 2001-12, Vol.1541 (1), p.114-119

2001

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Detecting sequence signals in targeting peptides using deep learning

Locating proteins in the cell using TargetP, SignalP and related tools

Sequencing degraded RNA addressed by 3' tag counting

ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs

Sorting signals, N-terminal modifications and abundance of the chloroplast proteome

What is a gene, post-ENCODE? History and updated definition

Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

Central Functions of the Lumenal and Peripheral Thylakoid Proteome of Arabidopsis Determined by Experimentation and Genome-Wide Prediction

Nuclease-assisted suppression of human DNA background in sepsis

Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies

In-depth transcriptome analysis reveals novel TARs and prevalent antisense transcription in human cell lines

DNA Replication-Timing Analysis of Human Chromosome 22 at High Resolution and Different Developmental States

Combined chromatin and expression analysis reveals specific regulatory mechanisms within cytokine genes in the macrophage early immune response

Analysis of transcript and protein overlap in a human osteosarcoma cell line

Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties

Correction: Combined Chromatin and Expression Analysis Reveals Specific Regulatory Mechanisms within Cytokine Genes in the Macrophage Early Immune Response

LumenP—A neural network predictor for protein localization in the thylakoid lumen

Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence

Analysis of stranded information using an automated procedure for strand specific RNA sequencing

Cone‐setting in spruce is regulated by conserved elements of the age‐dependent flowering pathway

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

Predicting protein subcellular localisation from amino acid sequence information

GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information

Prediction of organellar targeting signals

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