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Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea

The Pediatric infectious disease journal, 2020-03, Vol.39 (3), p.221-228

2020

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Oral iron exacerbates colitis and influences the intestinal microbiome

PloS one, 2018-10, Vol.13 (10), p.e0202460-e0202460

2018

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Phylogenomic early warning signals for SARS-CoV-2 epidemic waves

EBioMedicine, 2024-02, Vol.100, p.104939-104939, Article 104939

2024

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Generation of SARS-CoV-2 escape mutations by monoclonal antibody therapy

Nature communications, 2023-06, Vol.14 (1), p.3334-12, Article 3334

2023

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Emergence of diversity in carbapenemase-producing Escherichia coli ST131, England, January 2014 to June 2016

Euro surveillance : bulletin européen sur les maladies transmissibles, 2019-09, Vol.24 (37), p.17

2019

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Migration of Escherichia coli and Klebsiella pneumoniae Carbapenemase (KPC)-Producing Enterobacter cloacae through Wastewater Pipework and Establishment in Hospital Sink Waste Traps in a Laboratory Model System

Microorganisms (Basel), 2021-09, Vol.9 (9), p.1868

2021

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A Broad-Host-Range Plasmid Outbreak: Dynamics of IncL/M Plasmids Transferring Carbapenemase Genes

Antibiotics (Basel), 2022-11, Vol.11 (11), p.1641

2022

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Selection and characterization of mutational resistance to aztreonam/avibactam in β-lactamase-producing Enterobacterales

Journal of antimicrobial chemotherapy, 2021-12, Vol.77 (1), p.98-111

2021

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NDM-1 carbapenemase resistance gene vehicles emergent on distinct plasmid backbones from the IncL/M family

Journal of antimicrobial chemotherapy, 2022-02, Vol.77 (3), p.620-624

2022

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Detection in livestock of the human pandemic Escherichia coli ST131 fimH 30(R) clone carrying bla CTX-M-27

Journal of antimicrobial chemotherapy, 2021-01, Vol.76 (1), p.263-265

2021

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Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period

Journal of medical microbiology, 2022-05, Vol.71 (5)

2022

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KPC-Producing Enterobacter cloacae Transfer Through Pipework Between Hospital Sink Waste Traps in a Laboratory Model System

Infection control and hospital epidemiology, 2020-10, Vol.41 (S1), p.s308-s309

2020

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The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Virus evolution, 2022-12, Vol.8 (2), p.veac080

2022

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Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Nature communications, 2022-02, Vol.13 (1), p.751-16, Article 751

2022

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COVID-19 therapeutics: stewardship in England and considerations for antimicrobial resistance

Journal of antimicrobial chemotherapy, 2023-11, Vol.78 (Supplement_2), p.ii37-ii42

2023

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SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time

Journal of clinical microbiology, 2022-04, Vol.60 (4), p.e0240821-e0240821

2022

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Impact of SARS-CoV-2 Alpha variant (B.1.1.7) on prisons, England

Public health (London), 2022-03, Vol.204, p.21-24

2022

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Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

Nature communications, 2022-02, Vol.13 (1), p.1012-13, Article 1012

2022

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A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK

Virus evolution, 2024-11, Vol.10 (1), p.veae083

2024

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Detection in livestock of the human pandemic Escherichia coli ST131 fimH30(R) clone carrying blaCTX-M-27

Journal of antimicrobial chemotherapy, 2021-01, Vol.76 (1), p.263-265

2021

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A Large Scale Metagenomic Analysis of the Faecal Microbiota in Preterm Infants Developing Necrotising Enterocolitis

Ellaby, Nicholas Alexander Franklin

2018

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Phylogenomic early warning signals for SARS-CoV-2 epidemic wavesResearch in context

EBioMedicine, 2024-02, Vol.100, p.104939

2024

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Phylogenomic Early Warning Signals for Sars-Cov-2 Epidemic Waves

SSRN Electronic Journal, 2023

2023

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Characterization of Circulating Clostridium difficile Strains, Host Response and Intestinal Microbiome in Hospitalized Children With Diarrhea

Oral iron exacerbates colitis and influences the intestinal microbiome

Phylogenomic early warning signals for SARS-CoV-2 epidemic waves

Generation of SARS-CoV-2 escape mutations by monoclonal antibody therapy

Emergence of diversity in carbapenemase-producing Escherichia coli ST131, England, January 2014 to June 2016

Migration of Escherichia coli and Klebsiella pneumoniae Carbapenemase (KPC)-Producing Enterobacter cloacae through Wastewater Pipework and Establishment in Hospital Sink Waste Traps in a Laboratory Model System

A Broad-Host-Range Plasmid Outbreak: Dynamics of IncL/M Plasmids Transferring Carbapenemase Genes

Selection and characterization of mutational resistance to aztreonam/avibactam in β-lactamase-producing Enterobacterales

NDM-1 carbapenemase resistance gene vehicles emergent on distinct plasmid backbones from the IncL/M family

Detection in livestock of the human pandemic Escherichia coli ST131 fimH 30(R) clone carrying bla CTX-M-27

Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period

KPC-Producing Enterobacter cloacae Transfer Through Pipework Between Hospital Sink Waste Traps in a Laboratory Model System

The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

COVID-19 therapeutics: stewardship in England and considerations for antimicrobial resistance

SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time

Impact of SARS-CoV-2 Alpha variant (B.1.1.7) on prisons, England

Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK

Detection in livestock of the human pandemic Escherichia coli ST131 fimH30(R) clone carrying blaCTX-M-27

A Large Scale Metagenomic Analysis of the Faecal Microbiota in Preterm Infants Developing Necrotising Enterocolitis

Phylogenomic early warning signals for SARS-CoV-2 epidemic wavesResearch in context

Phylogenomic Early Warning Signals for Sars-Cov-2 Epidemic Waves

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