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Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

Bioinformatics (Oxford, England), 2017-08, Vol.33 (15), p.2424-2426

2017

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NIH Image to ImageJ: 25 years of image analysis

Nature methods, 2012-07, Vol.9 (7), p.671-675

2012

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ImageJ2: ImageJ for the next generation of scientific image data

BMC bioinformatics, 2017-11, Vol.18 (1), p.529-529, Article 529

2017

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The ImageJ ecosystem: An open platform for biomedical image analysis

Molecular reproduction and development, 2015-07, Vol.82 (7-8), p.518-529

2015

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TrackMate: An open and extensible platform for single-particle tracking

Methods (San Diego, Calif.), 2017-02, Vol.115, p.80-90

2017

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Beyond the margins: real-time detection of cancer using targeted fluorophores

Nature reviews. Clinical oncology, 2017-06, Vol.14 (6), p.347-364

2017

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The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis

Protein science, 2021-01, Vol.30 (1), p.234-249

2021

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Autofluorescence lifetime imaging of cellular metabolism: Sensitivity toward cell density, pH, intracellular, and intercellular heterogeneity

Cytometry. Part A, 2019-01, Vol.95 (1), p.56-69

2019

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The collagen receptor discoidin domain receptor 2 stabilizes SNAIL1 to facilitate breast cancer metastasis

Nature cell biology, 2013-06, Vol.15 (6), p.677-687

2013

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Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

Bioinformatics, 2011-04, Vol.27 (8), p.1179-1180

2011

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3D Collagen Alignment Limits Protrusions to Enhance Breast Cancer Cell Persistence

Biophysical journal, 2014-12, Vol.107 (11), p.2546-2558

2014

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Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning

2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2021, Vol.2021, p.14313-14323

2021

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Membrane dynamics during cellular wound repair

Molecular biology of the cell, 2016-07, Vol.27 (14), p.2272-2285

2016

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Open-source deep-learning software for bioimage segmentation

Molecular biology of the cell, 2021-04, Vol.32 (9), p.823-829

2021

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Complex and Noncentrosymmetric Stacking of Layered Metal Dichalcogenide Materials Created by Screw Dislocations

Journal of the American Chemical Society, 2017-03, Vol.139 (9), p.3496-3504

2017

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Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism

The Plant cell, 2015-09, Vol.27 (9), p.2545-2559

2015

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Postpartum mammary gland involution drives progression of ductal carcinoma in situ through collagen and COX-2

Nature medicine, 2011-09, Vol.17 (9), p.1109-1115

2011

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Collagen reorganization at the tumor-stromal interface facilitates local invasion

BMC medicine, 2006-12, Vol.4 (1), p.38-38, Article 38

2006

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CASPI: collaborative photon processing for active single-photon imaging

Nature communications, 2023-05, Vol.14 (1), p.3158-3158, Article 3158

2023

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Highly aligned stromal collagen is a negative prognostic factor following pancreatic ductal adenocarcinoma resection

Oncotarget, 2016-11, Vol.7 (46), p.76197-76213

2016

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In vivo multiphoton microscopy of NADH and FAD redox states, fluorescence lifetimes, and cellular morphology in precancerous epithelia

Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (49), p.19494-19499

2007

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Metadata matters: access to image data in the real world

The Journal of cell biology, 2010-05, Vol.189 (5), p.777-782

2010

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A three-dimensional computational model of collagen network mechanics

PloS one, 2014-11, Vol.9 (11), p.e111896-e111896

2014

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Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer

Journal of biomedical optics, 2014-01, Vol.19 (1), p.016007-016007

2014

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Collagen density promotes mammary tumor initiation and progression

BMC medicine, 2008-04, Vol.6 (1), p.11-11, Article 11

2008

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Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification

NIH Image to ImageJ: 25 years of image analysis

ImageJ2: ImageJ for the next generation of scientific image data

The ImageJ ecosystem: An open platform for biomedical image analysis

TrackMate: An open and extensible platform for single-particle tracking

Beyond the margins: real-time detection of cancer using targeted fluorophores

The ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis

Autofluorescence lifetime imaging of cellular metabolism: Sensitivity toward cell density, pH, intracellular, and intercellular heterogeneity

The collagen receptor discoidin domain receptor 2 stabilizes SNAIL1 to facilitate breast cancer metastasis

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

3D Collagen Alignment Limits Protrusions to Enhance Breast Cancer Cell Persistence

Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning

Membrane dynamics during cellular wound repair

Open-source deep-learning software for bioimage segmentation

Complex and Noncentrosymmetric Stacking of Layered Metal Dichalcogenide Materials Created by Screw Dislocations

Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism

Postpartum mammary gland involution drives progression of ductal carcinoma in situ through collagen and COX-2

Collagen reorganization at the tumor-stromal interface facilitates local invasion

CASPI: collaborative photon processing for active single-photon imaging

Highly aligned stromal collagen is a negative prognostic factor following pancreatic ductal adenocarcinoma resection

In vivo multiphoton microscopy of NADH and FAD redox states, fluorescence lifetimes, and cellular morphology in precancerous epithelia

Metadata matters: access to image data in the real world

A three-dimensional computational model of collagen network mechanics

Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer

Collagen density promotes mammary tumor initiation and progression

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