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The Interplay between the Host Microbiome and Pathogenic Viral Infections

mBio, 2021-12, Vol.12 (6), p.e0249621

2021

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Evolutionary transitions during RNA virus experimental evolution

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2016-08, Vol.371 (1701), p.20150441

Elena, Santiago F

2016

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Transmission modes affect the population structure of potato virus Y in potato

PLoS pathogens, 2020-06, Vol.16 (6), p.e1008608-e1008608

2020

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Viroids: survivors from the RNA world?

Annual review of microbiology, 2014-01, Vol.68 (1), p.395-414

2014

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Four principles to establish a universal virus taxonomy

PLoS biology, 2023-02, Vol.21 (2), p.e3001922

2023

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Effect of host species on the distribution of mutational fitness effects for an RNA virus

PLoS genetics, 2011-11, Vol.7 (11), p.e1002378-e1002378

2011

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Phase transitions in virology

Reports on progress in physics, 2021-11, Vol.84 (11), p.115901

2021

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Extremely High Mutation Rate of a Hammerhead Viroid

Science (American Association for the Advancement of Science), 2009-03, Vol.323 (5919), p.1308-1308

2009

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Within-host spatiotemporal dynamics of plant virus infection at the cellular level

PLoS genetics, 2014-02, Vol.10 (2), p.e1004186-e1004186

2014

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causes of epistasis

Proceedings of the Royal Society. B, Biological sciences, 2011-12, Vol.278 (1725), p.3617-3624

2011

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An efficient plasmid-based system for the recovery of recombinant vesicular stomatitis virus encoding foreign glycoproteins

Scientific reports, 2024-06, Vol.14 (1), p.14644-8, Article 14644

2024

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Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance

BMC plant biology, 2024-03, Vol.24 (1), p.172-172, Article 172

2024

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One is enough: in vivo effective population size is dose-dependent for a plant RNA virus

PLoS pathogens, 2011-07, Vol.7 (7), p.e1002122-e1002122

2011

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The rate and spectrum of spontaneous mutations in a plant RNA virus

Genetics (Austin), 2010-07, Vol.185 (3), p.983-989

2010

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Transcriptomic insights into the epigenetic modulation of turnip mosaic virus evolution in Arabidopsis thaliana

BMC genomics, 2024-09, Vol.25 (1), p.897-19, Article 897

2024

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Changes in the composition of the RNA virome mark evolutionary transitions in green plants

BMC biology, 2016-08, Vol.14 (1), p.68-68, Article 68

2016

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The Distribution of Fitness Effects Caused by Single-Nucleotide Substitutions in an RNA Virus

Proceedings of the National Academy of Sciences - PNAS, 2004-06, Vol.101 (22), p.8396-8401

2004

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Epistasis Correlates to Genomic Complexity

Proceedings of the National Academy of Sciences - PNAS, 2006-09, Vol.103 (39), p.14402-14405

2006

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Adaptive value of high mutation rates of RNA viruses: separating causes from consequences

Journal of virology, 2005-09, Vol.79 (18), p.11555-11558

2005

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A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens

PloS one, 2012-07, Vol.7 (7), p.e40526-e40526

2012

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Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus

eLife, 2024-01, Vol.12

2024

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Distribution of Fitness and Virulence Effects Caused by Single-Nucleotide Substitutions in Tobacco Etch Virus

Journal of Virology, 2007-12, Vol.81 (23), p.12979-12984

2007

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Within-host Evolution of Segments Ratio for the Tripartite Genome of Alfalfa Mosaic Virus

Scientific reports, 2017-07, Vol.7 (1), p.5004-15, Article 5004

2017

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Viral Fitness and Evolution: Population Dynamics and Adaptive Mechanisms

1, 2023

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The role of indels in evolution and pathogenicity of RNA viruses

Proceedings of the National Academy of Sciences - PNAS, 2023-08, Vol.120 (33), p.e2310785120-e2310785120

Elena, Santiago F

2023

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The Interplay between the Host Microbiome and Pathogenic Viral Infections

Evolutionary transitions during RNA virus experimental evolution

Transmission modes affect the population structure of potato virus Y in potato

Viroids: survivors from the RNA world?

Four principles to establish a universal virus taxonomy

Effect of host species on the distribution of mutational fitness effects for an RNA virus

Phase transitions in virology

Extremely High Mutation Rate of a Hammerhead Viroid

Within-host spatiotemporal dynamics of plant virus infection at the cellular level

causes of epistasis

An efficient plasmid-based system for the recovery of recombinant vesicular stomatitis virus encoding foreign glycoproteins

Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance

One is enough: in vivo effective population size is dose-dependent for a plant RNA virus

The rate and spectrum of spontaneous mutations in a plant RNA virus

Transcriptomic insights into the epigenetic modulation of turnip mosaic virus evolution in Arabidopsis thaliana

Changes in the composition of the RNA virome mark evolutionary transitions in green plants

The Distribution of Fitness Effects Caused by Single-Nucleotide Substitutions in an RNA Virus

Epistasis Correlates to Genomic Complexity

Adaptive value of high mutation rates of RNA viruses: separating causes from consequences

A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens

Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus

Distribution of Fitness and Virulence Effects Caused by Single-Nucleotide Substitutions in Tobacco Etch Virus

Within-host Evolution of Segments Ratio for the Tripartite Genome of Alfalfa Mosaic Virus

Viral Fitness and Evolution: Population Dynamics and Adaptive Mechanisms

The role of indels in evolution and pathogenicity of RNA viruses

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