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Competitive Interaction of the SGFRKMAF Peptide with 3CLpro Dimerization Intermediates: A Brownian Dynamics Investigation

The journal of physical chemistry. B, 2024-08, Vol.128 (30), p.7313-7321

ElSawy, Karim M.

2024

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Bio3d: an R package for the comparative analysis of protein structures

Bioinformatics, 2006-11, Vol.22 (21), p.2695-2696

2006

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The impact of viral RNA on the association free energies of capsid protein assembly: bacteriophage MS2 as a case study

Journal of molecular modeling, 2017-02, Vol.23 (2), p.47-10, Article 47

ElSawy, Karim M.

2017

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On the interaction mechanisms of a p53 peptide and nutlin with the MDM2 and MDMX proteins: A Brownian dynamics study

Cell cycle (Georgetown, Tex.), 2013-02, Vol.12 (3), p.394-404

2013

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Disruption of 3CLpro protease self-association by short peptides as a potential route to broad spectrum coronavirus inhibitors

Journal of biomolecular structure & dynamics, 2022-01, Vol.40 (24), p.13901-13911

2022

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Potential Breast Anticancer Drug Targets Revealed by Differential Gene Regulatory Network Analysis and Molecular Docking: Neoadjuvant Docetaxel Drug as a Case Study

Cancer informatics, 2018, Vol.17, p.1176935118755354-1176935118755354

2018

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Recognition Dynamics of p53 and MDM2: Implications for Peptide Design

The journal of physical chemistry. B, 2016-01, Vol.120 (2), p.320-328

2016

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Energy Landscape of Pentapeptides in a Higher-Order (φ, ψ) Conformational Subspace

Advances in Physical Chemistry, 2016-01, Vol.2016, p.13-22

2016

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Reactivation of mutant p53: Constraints on mechanism highlighted by principal component analysis of the DNA binding domain

Proteins, structure, function, and bioinformatics, 2016-10, Vol.84 (10), p.1443-1461

2016

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On the origin of the stereoselective affinity of Nutlin-3 geometrical isomers for the MDM2 protein

Cell cycle (Georgetown, Tex.), 2013-12, Vol.12 (24), p.3727-3735

2013

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On the Origin of Order in the Genome Organization of ssRNA Viruses

Biophysical journal, 2011-08, Vol.101 (4), p.774-780

2011

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Design of peptide-based coronavirus inhibitors that target disruption of 3CLpro protease self-association

Molecular systems design & engineering, 2022-08, Vol.7 (9), p.1138-1153

2022

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Activating the p53 anti-cancer pathway by targeting the MDM2/MDMX dimer interface with short peptide segments: a computational peptide design experiment

Molecular systems design & engineering, 2022-08, Vol.7 (8), p.996-16

2022

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A spatiotemporal characterization of the effect of p53 phosphorylation on its interaction with MDM2

Cell cycle (Georgetown, Tex.), 2015-01, Vol.14 (2), p.179-188

2015

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The Impact of Viral RNA on the Association Rates of Capsid Protein Assembly: Bacteriophage MS2 as a Case Study

Journal of molecular biology, 2010-07, Vol.400 (4), p.935-947

2010

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Peptide Inhibitors of Viral Assembly: A Novel Route to Broad-Spectrum Antivirals

Journal of chemical information and modeling, 2012-03, Vol.52 (3), p.770-776

2012

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Characterization of the Ligand Receptor Encounter Complex and Its Potential for in Silico Kinetics-Based Drug Development

Journal of chemical theory and computation, 2012-01, Vol.8 (1), p.314-321

2012

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The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA

Nucleic acids research, 2005-01, Vol.33 (18), p.5749-5762

2005

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New fused pyrimidines of potential biosignificant interest. Syntheses and molecular modelling studies

Acta chimica Slovenica, 2010-01, Vol.57 (1), p.230-243

2010

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Energy landscape of pentapeptides din a higher-order conformational subspace

Advances in physical chemistry, 2016-01

ElSawy, Karim M

2016

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Polyomaviridae Assembly Polymorphism from an Energy Landscape Perspective

Computational and mathematical methods in medicine, 2008-01, Vol.9 (3-4), p.245-256

2008

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The DNA conformational energy landscape: sequence-dependent conformational equilibria of duplex DNA

Open Journal of Cell and Protein Science, 2020-05, p.1-10

2020

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The DNA conformational energy landscape: sequence-dependent conformational equilibria of duplex DNA

Open Journal of Cell and Protein Science, 2020-05, Vol.3 (1), p.1-10

2020

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Mapping the potential energy surface of biomolecules

Elsawy, Karim Mohamed

2004

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Hybrid k-Preemptive Transmission Scheme for Minimal Age of Information in IoT Networks

IEEE wireless communications letters, 2024-09, Vol.13 (9), p.2342-2346

2024

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Competitive Interaction of the SGFRKMAF Peptide with 3CLpro Dimerization Intermediates: A Brownian Dynamics Investigation

Bio3d: an R package for the comparative analysis of protein structures

The impact of viral RNA on the association free energies of capsid protein assembly: bacteriophage MS2 as a case study

On the interaction mechanisms of a p53 peptide and nutlin with the MDM2 and MDMX proteins: A Brownian dynamics study

Disruption of 3CLpro protease self-association by short peptides as a potential route to broad spectrum coronavirus inhibitors

Potential Breast Anticancer Drug Targets Revealed by Differential Gene Regulatory Network Analysis and Molecular Docking: Neoadjuvant Docetaxel Drug as a Case Study

Recognition Dynamics of p53 and MDM2: Implications for Peptide Design

Energy Landscape of Pentapeptides in a Higher-Order (φ, ψ) Conformational Subspace

Reactivation of mutant p53: Constraints on mechanism highlighted by principal component analysis of the DNA binding domain

On the origin of the stereoselective affinity of Nutlin-3 geometrical isomers for the MDM2 protein

On the Origin of Order in the Genome Organization of ssRNA Viruses

Design of peptide-based coronavirus inhibitors that target disruption of 3CLpro protease self-association

Activating the p53 anti-cancer pathway by targeting the MDM2/MDMX dimer interface with short peptide segments: a computational peptide design experiment

A spatiotemporal characterization of the effect of p53 phosphorylation on its interaction with MDM2

The Impact of Viral RNA on the Association Rates of Capsid Protein Assembly: Bacteriophage MS2 as a Case Study

Peptide Inhibitors of Viral Assembly: A Novel Route to Broad-Spectrum Antivirals

Characterization of the Ligand Receptor Encounter Complex and Its Potential for in Silico Kinetics-Based Drug Development

The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA

New fused pyrimidines of potential biosignificant interest. Syntheses and molecular modelling studies

Energy landscape of pentapeptides din a higher-order conformational subspace

Polyomaviridae Assembly Polymorphism from an Energy Landscape Perspective

The DNA conformational energy landscape: sequence-dependent conformational equilibria of duplex DNA

The DNA conformational energy landscape: sequence-dependent conformational equilibria of duplex DNA

Mapping the potential energy surface of biomolecules

Hybrid k-Preemptive Transmission Scheme for Minimal Age of Information in IoT Networks

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